RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	GNAI3	P08754	354 aa		18.2	■□□□□ 0.5
CHFR-223	ENST00000544268	PTMS	P20962	102 aa		18.2	■□□□□ 0.5
CHFR-223	ENST00000544268	PRIM1	P49642	420 aa	Known RBP	18.2	■□□□□ 0.5
CHFR-223	ENST00000544268	DOT1L	Q8TEK3	1739 aa		18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	NBPF26	B4DH59	902 aa		18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	DDX58	O95786	925 aa	Known RBP	18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	NBPF14	Q5TI25	921 aa		18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	MEX3C	Q5U5Q3	659 aa	Known RBP	18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	NBPF10	Q6P3W6	841 aa	Known RBP	18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	NBPF15	Q8N660	670 aa		18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	GBP4	Q96PP9	640 aa		18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	OSBPL3	Q9H4L5	887 aa		18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	IBTK	Q9P2D0	1353 aa	Predicted RBP	18.19	■□□□□ 0.5
CHFR-223	ENST00000544268	UBTFL1	P0CB47	393 aa	Predicted RBP	18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	CASC1	Q6TDU7	716 aa		18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	MTERF4	Q7Z6M4	381 aa	Known RBP	18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	BAG4	O95429	457 aa	Known RBP	18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	A1BG	P04217	495 aa		18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	MSN	P26038	577 aa	Known RBP	18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	PPP1R42	Q7Z4L9	355 aa		18.18	■□□□□ 0.5
CHFR-223	ENST00000544268	RIC3	Q7Z5B4	369 aa		18.17	■□□□□ 0.5
CHFR-223	ENST00000544268	ACSBG1	Q96GR2	724 aa		18.17	■□□□□ 0.5
CHFR-223	ENST00000544268	CWF19L2	Q2TBE0	894 aa	Known RBP	18.16	■□□□□ 0.5
CHFR-223	ENST00000544268	ESYT1	Q9BSJ8	1104 aa		18.16	■□□□□ 0.5
CHFR-223	ENST00000544268	FAM13B	Q9NYF5	915 aa		18.16	■□□□□ 0.5
CHFR-223	ENST00000544268		A0A0G2JS52	829 aa		18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	REC8	O95072	547 aa		18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	MCTP1	Q6DN14	999 aa		18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	ANP32B	Q92688	251 aa	Known RBP	18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	ANO2	Q9NQ90	1003 aa		18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	ZDHHC9	Q9Y397	364 aa		18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	SURF6	O75683	361 aa	Known RBP	18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	NEK4	P51957	841 aa		18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	18.15	■□□□□ 0.5
CHFR-223	ENST00000544268	CHML	P26374	656 aa		18.14	■□□□□ 0.5
CHFR-223	ENST00000544268	ANKRD13D	Q6ZTN6	518 aa		18.14	■□□□□ 0.5
CHFR-223	ENST00000544268	DNAJC10	Q8IXB1	793 aa		18.14	■□□□□ 0.5
CHFR-223	ENST00000544268	ALDH1L1	O75891	902 aa		18.14	■□□□□ 0.49
CHFR-223	ENST00000544268	LINS1	Q8NG48	757 aa		18.14	■□□□□ 0.49
CHFR-223	ENST00000544268	IPO4	Q8TEX9	1081 aa	Known RBP	18.14	■□□□□ 0.49
CHFR-223	ENST00000544268	SLC4A9	Q96Q91	983 aa		18.14	■□□□□ 0.49
CHFR-223	ENST00000544268	AFF2	P51816	1311 aa		18.14	■□□□□ 0.49
CHFR-223	ENST00000544268	SRGAP3	O43295	1099 aa		18.13	■□□□□ 0.49
CHFR-223	ENST00000544268	DTNB	O60941	627 aa		18.13	■□□□□ 0.49
CHFR-223	ENST00000544268	NASP	P49321	788 aa	Predicted RBP	18.13	■□□□□ 0.49
CHFR-223	ENST00000544268	UPF3B	Q9BZI7	483 aa	Known RBP	18.13	■□□□□ 0.49
CHFR-223	ENST00000544268	IGKV5-2	P06315	115 aa		18.13	■□□□□ 0.49
CHFR-223	ENST00000544268	HS1BP3	Q53T59	392 aa		18.13	■□□□□ 0.49
CHFR-223	ENST00000544268	ST18	O60284	1047 aa		18.12	■□□□□ 0.49
CHFR-223	ENST00000544268	CYP2E1	P05181	493 aa	Predicted RBP	18.12	■□□□□ 0.49
CHFR-223	ENST00000544268	SSH3	Q8TE77	659 aa		18.12	■□□□□ 0.49
CHFR-223	ENST00000544268	MYD88	Q99836	296 aa		18.12	■□□□□ 0.49
CHFR-223	ENST00000544268	METTL22	Q9BUU2	404 aa	Predicted RBP	18.12	■□□□□ 0.49
CHFR-223	ENST00000544268	TTLL7	Q6ZT98	887 aa		18.11	■□□□□ 0.49
CHFR-223	ENST00000544268	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.11	■□□□□ 0.49
CHFR-223	ENST00000544268	C9orf78	Q9NZ63	289 aa	Predicted RBP	18.11	■□□□□ 0.49
CHFR-223	ENST00000544268	R3HCC1	Q9Y3T6	440 aa	Known RBP	18.11	■□□□□ 0.49
CHFR-223	ENST00000544268	LARP6	Q9BRS8	491 aa	Known RBP	18.11	■□□□□ 0.49
CHFR-223	ENST00000544268	DDX49	Q9Y6V7	483 aa	Known RBP	18.11	■□□□□ 0.49
CHFR-223	ENST00000544268	KCNQ2	O43526	872 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	NEXN	Q0ZGT2	675 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	PLBD2	Q8NHP8	589 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	TMX3	Q96JJ7	454 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	TUBGCP6	Q96RT7	1819 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	ARFGEF2	Q9Y6D5	1785 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	NEURL1B	A8MQ27	555 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	NCL	P19338	710 aa	Known RBP	18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	RHPN1	Q8TCX5	695 aa		18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	18.1	■□□□□ 0.49
CHFR-223	ENST00000544268	ZNF500	O60304	480 aa	Predicted RBP	18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	STARD3NL	O95772	234 aa		18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	FOXD4L3	Q6VB84	417 aa	Predicted RBP	18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	GJD4	Q96KN9	370 aa	Predicted RBP	18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	PA2G4	Q9UQ80	394 aa	Known RBP	18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	GRM8	O00222	908 aa		18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	PI4K2B	Q8TCG2	481 aa		18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	STAP2	Q9UGK3	403 aa		18.09	■□□□□ 0.49
CHFR-223	ENST00000544268	THSD7A	Q9UPZ6	1657 aa		18.08	■□□□□ 0.49
CHFR-223	ENST00000544268	DYNC1I1	O14576	645 aa		18.08	■□□□□ 0.49
CHFR-223	ENST00000544268	POLA2	Q14181	598 aa		18.08	■□□□□ 0.49
CHFR-223	ENST00000544268	RBM27	Q9P2N5	1060 aa	Known RBP	18.08	■□□□□ 0.49
CHFR-223	ENST00000544268	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.08	■□□□□ 0.49
CHFR-223	ENST00000544268	CYP19A1	P11511	503 aa	Predicted RBP	18.08	■□□□□ 0.48
CHFR-223	ENST00000544268	UTP14C	Q5TAP6	766 aa	Known RBP	18.08	■□□□□ 0.48
CHFR-223	ENST00000544268	LMBRD1	Q9NUN5	540 aa		18.08	■□□□□ 0.48
CHFR-223	ENST00000544268	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.08	■□□□□ 0.48
CHFR-223	ENST00000544268	UQCRHL	A0A096LP55	91 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	ATP5J2-PTCD1	G3V325	749 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	UQCRH	P07919	91 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	GCKR	Q14397	625 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	CAVIN1	Q6NZI2	390 aa	Known RBP	18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	UTY	O14607	1347 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	PRPF40A	O75400	957 aa	Known RBP	18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	FBXO41	Q8TF61	875 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	ZBTB3	Q9H5J0	574 aa		18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	NOL7	Q9UMY1	257 aa	Known RBP	18.07	■□□□□ 0.48
CHFR-223	ENST00000544268	TJP1	Q07157	1748 aa		18.06	■□□□□ 0.48
CHFR-223	ENST00000544268	CLEC17A	Q6ZS10	378 aa		18.06	■□□□□ 0.48
CHFR-223	ENST00000544268	ATRN	O75882	1429 aa		18.06	■□□□□ 0.48

Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms