RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 ARFGEF2Q9Y6D5 1785 aa9.98□□□□□ -0.81
CCDC39-201ENST00000442201 FAM161AQ3B820 660 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 HSP90AB4PQ58FF6 505 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 JARID2Q92833 1246 aaPredicted RBP9.97□□□□□ -0.81
CCDC39-201ENST00000442201 CNTNAP4Q9C0A0 1308 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 COL15A1P39059 1388 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 KCNQ4P56696 695 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 HLFQ16534 295 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 LRRCC1Q9C099 1032 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 CICQ96RK0 1608 aaPredicted RBP9.97□□□□□ -0.81
CCDC39-201ENST00000442201 RAB11FIP3O75154 756 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 CASP7P55210 303 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 BACH2Q9BYV9 841 aa9.97□□□□□ -0.81
CCDC39-201ENST00000442201 RC3H1Q5TC82 1133 aaKnown RBP9.96□□□□□ -0.81
CCDC39-201ENST00000442201 SMARCA5O60264 1052 aaPredicted RBP9.96□□□□□ -0.82
CCDC39-201ENST00000442201 GPTP24298 496 aa9.96□□□□□ -0.82
CCDC39-201ENST00000442201 EPHA10Q5JZY3 1008 aa9.96□□□□□ -0.82
CCDC39-201ENST00000442201 TRIM37O94972 964 aa9.95□□□□□ -0.82
CCDC39-201ENST00000442201 RABL6Q3YEC7 729 aaPredicted RBP9.95□□□□□ -0.82
CCDC39-201ENST00000442201 ZNF831Q5JPB2 1677 aa9.95□□□□□ -0.82
CCDC39-201ENST00000442201 OS9Q13438 667 aaPredicted RBP9.95□□□□□ -0.82
CCDC39-201ENST00000442201 NLRP10Q86W26 655 aa9.95□□□□□ -0.82
CCDC39-201ENST00000442201 NUP188Q5SRE5 1749 aa9.95□□□□□ -0.82
CCDC39-201ENST00000442201 BTAF1O14981 1849 aa9.95□□□□□ -0.82
CCDC39-201ENST00000442201 PCCAP05165 728 aaPredicted RBP9.95□□□□□ -0.82
CCDC39-201ENST00000442201 KIF1BPQ96EK5 621 aa9.95□□□□□ -0.82
CCDC39-201ENST00000442201 RPS6KA4O75676 772 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 CAMTA2O94983 1202 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 ZBTB38Q8NAP3 1195 aaPredicted RBP9.94□□□□□ -0.82
CCDC39-201ENST00000442201 ZNF652Q9Y2D9 606 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 C8orf34Q49A92 452 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 LMBR1LQ6UX01 489 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 ERC1Q8IUD2 1116 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 PLEKHM2Q8IWE5 1019 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 C16orf71Q8IYS4 520 aaPredicted RBP9.94□□□□□ -0.82
CCDC39-201ENST00000442201 ZNF34Q8IZ26 560 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 RHPN1Q8TCX5 695 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 GNPATO15228 680 aa9.94□□□□□ -0.82
CCDC39-201ENST00000442201 RGS17Q9UGC6 210 aaPredicted RBP9.94□□□□□ -0.82
CCDC39-201ENST00000442201 PA2G4Q9UQ80 394 aaKnown RBP9.94□□□□□ -0.82
CCDC39-201ENST00000442201 RTCBQ9Y3I0 505 aaKnown RBP9.94□□□□□ -0.82
CCDC39-201ENST00000442201 RREB1Q92766 1687 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 FOXO4P98177 505 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 G3BP1Q13283 466 aaKnown RBP eCLIP9.93□□□□□ -0.82
CCDC39-201ENST00000442201 BMP2KLQ5H9B9 411 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 FAM89AQ96GI7 184 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 TRMT112Q9UI30 125 aaKnown RBP9.93□□□□□ -0.82
CCDC39-201ENST00000442201 HSP90AA1P07900 732 aaKnown RBP9.93□□□□□ -0.82
CCDC39-201ENST00000442201 PARP10Q53GL7 1025 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 SLC27A3Q5K4L6 730 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 CLEC4GQ6UXB4 293 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 IL1RAPL2Q9NP60 686 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 CHMP3Q9Y3E7 222 aa9.93□□□□□ -0.82
CCDC39-201ENST00000442201 HMGB2P26583 209 aaKnown RBP9.92□□□□□ -0.82
CCDC39-201ENST00000442201 POTEAQ6S8J7 498 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 OTUD7AQ8TE49 926 aaPredicted RBP9.92□□□□□ -0.82
CCDC39-201ENST00000442201 COPRSQ9NQ92 184 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 UBN2Q6ZU65 1347 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 CDHR2Q9BYE9 1310 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 RGL2O15211 777 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 AK7Q96M32 723 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 COL5A3P25940 1745 aaPredicted RBP9.92□□□□□ -0.82
CCDC39-201ENST00000442201 AFDNP55196 1824 aaKnown RBP9.92□□□□□ -0.82
CCDC39-201ENST00000442201 PLA2G12BQ9BX93 195 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 LRRC4BQ9NT99 713 aa9.92□□□□□ -0.82
CCDC39-201ENST00000442201 NIP7Q9Y221 180 aaKnown RBP eCLIP9.92□□□□□ -0.82
CCDC39-201ENST00000442201 SBF2Q86WG5 1849 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 RFX5P48382 616 aaPredicted RBP9.91□□□□□ -0.82
CCDC39-201ENST00000442201 PTPN12Q05209 780 aaKnown RBP9.91□□□□□ -0.82
CCDC39-201ENST00000442201 CLASRPQ8N2M8 674 aaKnown RBP9.91□□□□□ -0.82
CCDC39-201ENST00000442201 SIL1Q9H173 461 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 MYH14Q7Z406 1995 aaKnown RBP9.91□□□□□ -0.82
CCDC39-201ENST00000442201 BRWD3Q6RI45 1802 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 PDE1AP54750 535 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 KLHDC4Q8TBB5 520 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 OSBPL3Q9H4L5 887 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 NARFQ9UHQ1 456 aa9.91□□□□□ -0.82
CCDC39-201ENST00000442201 IRS4O14654 1257 aaPredicted RBP9.9□□□□□ -0.82
CCDC39-201ENST00000442201 ZPR1O75312 459 aa9.9□□□□□ -0.82
CCDC39-201ENST00000442201 MX1P20591 662 aa9.9□□□□□ -0.82
CCDC39-201ENST00000442201 TTC22Q5TAA0 569 aa9.9□□□□□ -0.82
CCDC39-201ENST00000442201 UTP14AQ9BVJ6 771 aaKnown RBP9.9□□□□□ -0.82
CCDC39-201ENST00000442201 SH3TC1Q8TE82 1336 aa9.9□□□□□ -0.82
CCDC39-201ENST00000442201 SUSD4Q5VX71 490 aa9.9□□□□□ -0.82
CCDC39-201ENST00000442201 SALL3Q9BXA9 1300 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 TXNRD1Q16881 649 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 CCDC57Q2TAC2 916 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 TRAPPC3LQ5T215 181 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 SMIM5Q71RC9 77 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 POTEDQ86YR6 584 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 SYNE4Q8N205 404 aa9.9□□□□□ -0.83
CCDC39-201ENST00000442201 RRAGDQ9NQL2 400 aaPredicted RBP9.9□□□□□ -0.83
CCDC39-201ENST00000442201 LY75O60449 1722 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 FAM177BA6PVY3 158 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 PLSCR1O15162 318 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 PDE8AO60658 829 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 SASH1O94885 1247 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 APBA3O96018 575 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 CSF1RP07333 972 aa9.89□□□□□ -0.83
CCDC39-201ENST00000442201 HSP90B1P14625 803 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms