RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MAGEA4P43358 317 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KIR2DS2P43631 304 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ACADSBP45954 432 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 RPS10P46783 165 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 SLC6A8P48029 635 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MNAT1P51948 309 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 SLC7A2P52569 658 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 METAP1P53582 386 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CRISP3P54108 245 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 RAG2P55895 527 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NME5P56597 212 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 YBEYP58557 167 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 SRP54P61011 504 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 STX1BP61266 288 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 RPL32P62910 135 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 CCZ1BP86790 482 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CCZ1P86791 482 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 PAX5Q02548 391 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 PLOD1Q02809 727 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 UBXN1Q04323 297 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 YWHAHQ04917 246 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 LRRC63Q05C16 580 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 OVGP1Q12889 678 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NPRL3Q12980 569 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 UNC119Q13432 240 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TFDP1Q14186 410 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 EIF2B1Q14232 305 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 RCN2Q14257 317 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KCNJ11Q14654 390 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KIR2DS1Q14954 304 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 RAB35Q15286 201 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 LY6EQ16553 131 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CDKN3Q16667 212 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CYP51A1Q16850 503 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KCTD19Q17RG1 926 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 LRRC36Q1X8D7 754 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KRTAP13-2Q52LG2 175 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CCDC184Q52MB2 194 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 IFI44LQ53G44 452 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TEX44Q53QW1 395 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CYBRD1Q53TN4 286 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 FAM133BQ5BKY9 247 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 EOGTQ5NDL2 527 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 SLC10A5Q5PT55 438 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CASC10Q5T4H9 136 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 C1QTNF12Q5T7M4 302 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 DDI2Q5TDH0 399 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 IL23RQ5VWK5 629 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MEDAGQ5VYS4 303 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 HIST2H2AA3Q6FI13 130 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CTRB2Q6GPI1 263 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 OR5M10Q6IEU7 315 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 SLC39A4Q6P5W5 647 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 FAM199XQ6PEV8 388 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 C11orf88Q6PI97 169 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 FAM159AQ6UWV7 190 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 BTNL3Q6UXE8 466 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 UNQ9370/PRO34162Q6UXP9 181 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ZFP2Q6ZN57 461 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ACP7Q6ZNF0 438 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 Q6ZR03 302 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 COX15Q7KZN9 410 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 PRSS41Q7RTY9 318 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 HSD11B1LQ7Z5J1 315 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NET1Q7Z628 596 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 TSEN54Q7Z6J9 526 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 TMEM179BQ7Z7N9 219 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 LRP11Q86VZ4 500 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 UNC45BQ8IWX7 931 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 C12orf56Q8IXR9 622 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 PEX5LQ8IYB4 626 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MCOLN2Q8IZK6 566 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 LINC01561Q8N1V8 128 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ZNF786Q8N393 782 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 BPIFB2Q8N4F0 458 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CSNK1A1LQ8N752 337 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ARIH2OSQ8N7S6 290 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 DCAF4L2Q8NA75 395 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MLKLQ8NB16 471 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MINDY2Q8NBR6 621 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MDS2Q8NDY4 140 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 LPCAT1Q8NF37 534 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TMEM185AQ8NFB2 350 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NPBQ8NG41 125 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 WDR36Q8NI36 951 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 NANPQ8TBE9 248 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MARCH1Q8TCQ1 289 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 BLOC1S5Q8TDH9 187 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 PHF10Q8WUB8 498 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 DEDD2Q8WXF8 326 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TMEM37Q8WXS4 190 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CHCHD10Q8WYQ3 142 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 DCUN1D4Q92564 292 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ART4Q93070 314 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MCHR2Q969V1 340 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 RPUSD4Q96CM3 377 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 LRRC58Q96CX6 371 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CELF6Q96J87 481 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 JAKMIP1Q96N16 626 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 SPATA13Q96N96 652 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms