RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SLC35A5Q9BS91 424 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 TBL1XR1Q9BZK7 514 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 TSPAN10Q9H1Z9 355 aaPredicted RBP16.67■□□□□ 0.26
CLN3-259ENST00000637551 PTGES2Q9H7Z7 377 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 LIPT1Q9Y234 373 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 A0A1B0GTH9 108 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 GXYLT2A0PJZ3 443 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 CCDC154A6NI56 674 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 ADAM10O14672 748 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 WDR1O75083 606 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 ACTL6AO96019 429 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 LDLRP01130 860 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 RFPL3SP0C7P2 107 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 GABRA1P14867 456 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 MATN1P21941 496 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 ARHGAP11BQ3KRB8 267 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 ANKRD46Q86W74 232 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 PM20D2Q8IYS1 436 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 JSRP1Q96MG2 331 aaPredicted RBP16.66■□□□□ 0.26
CLN3-259ENST00000637551 OR7D2Q96RA2 312 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 RAD21L1Q9H4I0 556 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 ZNF385DQ9H6B1 395 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 GALNT9Q9HCQ5 603 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 PPP4R1LQ9P1A2 415 aa16.66■□□□□ 0.26
CLN3-259ENST00000637551 ERRFI1Q9UJM3 462 aaPredicted RBP16.66■□□□□ 0.26
CLN3-259ENST00000637551 FAM47E-STBD1D6RA91 191 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 NPIPB9F8W1W9 429 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 NME6O75414 186 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 OXSR1O95747 527 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 IGKV1D-16P01601 117 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 HPGDP15428 266 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 ADSLP30566 484 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 CHI3L1P36222 383 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 DGKQP52824 942 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 SUMO3P55854 103 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 DSCR4P56555 118 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 WDR53Q7Z5U6 358 aaPredicted RBP16.65■□□□□ 0.26
CLN3-259ENST00000637551 FGD2Q7Z6J4 655 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 OR5AK3PQ8NH89 298 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 NUDT8Q8WV74 236 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 CDS1Q92903 461 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 GNRHR2Q96P88 292 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 ZNF350Q9GZX5 532 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 DEFB127Q9H1M4 99 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 LDAHQ9H6V9 325 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 NPHS2Q9NP85 383 aa16.65■□□□□ 0.26
CLN3-259ENST00000637551 LRBAP50851 2863 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 A0A087WZY1 265 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 C7orf72A4D263 438 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 H3BNH8 94 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 SCDO00767 359 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 SLC22A2O15244 555 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 LRRTM2O43300 516 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 CDC40O60508 579 aaKnown RBP eCLIP16.64■□□□□ 0.25
CLN3-259ENST00000637551 STX11O75558 287 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 CPSF4O95639 269 aaKnown RBP16.64■□□□□ 0.25
CLN3-259ENST00000637551 PPIBP23284 216 aaKnown RBP16.64■□□□□ 0.25
CLN3-259ENST00000637551 CHMP24386 653 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 ADH7P40394 386 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 ATP12AP54707 1039 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 FADDQ13158 208 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 GRAMD1BQ3KR37 738 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 TIGD2Q4W5G0 525 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 LRIF1Q5T3J3 769 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 WLSQ5T9L3 541 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 VASNQ6EMK4 673 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 TMEM211Q6ICI0 200 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 TOR1AIP2Q8NFQ8 470 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 GTF2H4Q92759 462 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 SPDL1Q96EA4 605 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 ZNF317Q96PQ6 595 aaPredicted RBP16.64■□□□□ 0.25
CLN3-259ENST00000637551 SDF2Q99470 211 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 PRDM14Q9GZV8 571 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 SAP130Q9H0E3 1048 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 KLHL14Q9P2G3 628 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 MEMO1Q9Y316 297 aa16.64■□□□□ 0.25
CLN3-259ENST00000637551 A0A096LPI6 279 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 TRGV8A0A0C4DH27 118 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 A0A0G2JND7 137 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 A0A1W2PP18 115 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 NDUFB5O43674 189 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 SEMA7AO75326 666 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 ANGPTL1O95841 491 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 NME5P56597 212 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 GUCY1A3Q02108 690 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 ZNF141Q15928 474 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 BCL2A1Q16548 175 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 C3AR1Q16581 482 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 ZNF630Q2M218 657 aaPredicted RBP16.63■□□□□ 0.25
CLN3-259ENST00000637551 KLHL26Q53HC5 615 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 DESI1Q6ICB0 168 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 AAGABQ6PD74 315 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 ENPP6Q6UWR7 440 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 C16orf62Q7Z3J2 963 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 DOLPP1Q86YN1 238 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 FUNDC1Q8IVP5 155 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 FAM83FQ8NEG4 500 aaPredicted RBP16.63■□□□□ 0.25
CLN3-259ENST00000637551 OR4K17Q8NGC6 315 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 OR9I1Q8NGQ6 314 aa16.63■□□□□ 0.25
CLN3-259ENST00000637551 OR4C3Q8NH37 302 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms