RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	PIK3IP1	Q96FE7	263 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	COX4I2	Q96KJ9	171 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	FAM111A	Q96PZ2	611 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	BBS4	Q96RK4	519 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	GLIPR2	Q9H4G4	154 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	SSU72	Q9NP77	194 aa	Known RBP	13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	INTS9	Q9NV88	658 aa	Known RBP	13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	SIRT5	Q9NXA8	310 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	NDRG3	Q9UGV2	375 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	ABCG2	Q9UNQ0	655 aa		13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	C19orf53	Q9UNZ5	99 aa	Predicted RBP	13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	EIF3L	Q9Y262	564 aa	Known RBP	13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	POLR3H	Q9Y535	204 aa	Predicted RBP	13.21	□□□□□ -0.29
IRF3-223	ENST00000599223	CASK	O14936	926 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	GMFG	O60234	142 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	AQP8	O94778	261 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	IGKV1D-16	P01601	117 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	HEXA	P06865	529 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MPI	P34949	423 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MDH1	P40925	334 aa	Known RBP	13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	PKNOX1	P55347	436 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	GNGT1	P63211	74 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	PSPH	P78330	225 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	PON3	Q15166	354 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	TMEM44	Q2T9K0	475 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	SHE	Q5VZ18	495 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	OR2A2	Q6IF42	318 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MARCH3	Q86UD3	253 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	GGN	Q86UU5	652 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MEIOB	Q8N635	442 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	PPP1R14C	Q8TAE6	165 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	ZC3HAV1L	Q96H79	300 aa	Known RBP	13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	AMDHD1	Q96NU7	426 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	NPAS1	Q99742	590 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MED18	Q9BUE0	208 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	UBTD1	Q9HAC8	227 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MID1IP1	Q9NPA3	183 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	MYNN	Q9NPC7	610 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	FAM120C	Q9NX05	1096 aa	Known RBP	13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	PTGDR2	Q9Y5Y4	395 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	USF3	Q68DE3	2245 aa		13.2	□□□□□ -0.3
IRF3-223	ENST00000599223	GXYLT2	A0PJZ3	443 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	TMEM120B	A0PK00	339 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223		G3V2L1	256 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223		H7C1Q1	480 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	EMC8	O43402	210 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	IL33	O95760	270 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	LY6G6D	O95868	133 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	POU2F1	P14859	743 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	KRT4	P19013	534 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	SLC6A8	P48029	635 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	RFX3	P48380	749 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	PCYT1A	P49585	367 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	SLC18A1	P54219	525 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	EEF1A1	P68104	462 aa	Known RBP	13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	MRPS22	P82650	360 aa	Known RBP	13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	C2orf80	Q0P641	193 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	GANAB	Q14697	944 aa	Known RBP	13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	CYP27C1	Q4G0S4	372 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	SPDYA	Q5MJ70	313 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	EEF1A1P5	Q5VTE0	462 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	GALNT10	Q86SR1	603 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	ANKRD42	Q8N9B4	389 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	ZNF610	Q8N9Z0	462 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	ACMSD	Q8TDX5	336 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223		Q96MF0	132 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	KLHDC3	Q9BQ90	382 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	LMF2	Q9BU23	707 aa	Known RBP	13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	ZNF395	Q9H8N7	513 aa	Predicted RBP	13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	MIEF1	Q9NQG6	463 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	DDX18	Q9NVP1	670 aa	Known RBP	13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	ZNF175	Q9Y473	711 aa		13.19	□□□□□ -0.3
IRF3-223	ENST00000599223	IGLV3-32	A0A0A0MS00	114 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	SERTM1	A2A2V5	107 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	TRIM64	A6NGJ6	449 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	TRIM64B	A6NI03	449 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	COPE	O14579	308 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	TM9SF1	O15321	606 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	SMPD2	O60906	423 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	TNFRSF21	O75509	655 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	UTS2	O95399	124 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	THBD	P07204	575 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	CD8B	P10966	210 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	PYGB	P11216	843 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	NTS	P30990	170 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	GSTM5	P46439	218 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	DECR1	Q16698	335 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	GRAMD1B	Q3KR37	738 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	ANKRD34A	Q69YU3	496 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	ANKRD26P1	Q6NSI1	321 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	CHMP1B	Q7LBR1	199 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	ZNF551	Q7Z340	670 aa	Predicted RBP	13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	LCA5	Q86VQ0	697 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	SLC22A9	Q8IVM8	553 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	C4orf33	Q8N1A6	199 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	METTL25	Q8N6Q8	603 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	CCNYL1	Q8N7R7	359 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	DUSP19	Q8WTR2	217 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	PIK3R3	Q92569	461 aa		13.18	□□□□□ -0.3
IRF3-223	ENST00000599223	ELP4	Q96EB1	424 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms