RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TAS2R7Q9NYW3 318 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 C6orf203Q9P0P8 240 aaPredicted RBP17.12■□□□□ 0.33
VPS35-202ENST00000561713 EIF3LQ9Y262 564 aaKnown RBP17.12■□□□□ 0.33
VPS35-202ENST00000561713 TLN2Q9Y4G6 2542 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 PRR14LQ5THK1 2151 aa17.12■□□□□ 0.33
VPS35-202ENST00000561713 OR2M5A3KFT3 312 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 AZIN1O14977 448 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 SMAD7O15105 426 aaKnown RBP17.11■□□□□ 0.33
VPS35-202ENST00000561713 IL33O95760 270 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 CHRNGP07510 517 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 LINC00032P0C843 101 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 CCT5P48643 541 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 SUCLG1P53597 346 aaKnown RBP17.11■□□□□ 0.33
VPS35-202ENST00000561713 PSPHP78330 225 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 GALNTL6Q49A17 601 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 APOOLQ6UXV4 268 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 ZAR1Q86SH2 424 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 TDRPQ86YL5 185 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 AGR3Q8TD06 166 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 DUSP19Q8WTR2 217 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 SLC9A6Q92581 669 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 C1GALT1C1Q96EU7 318 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 UCN2Q96RP3 112 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 OPN3Q9H1Y3 402 aaPredicted RBP17.11■□□□□ 0.33
VPS35-202ENST00000561713 NDRG3Q9UGV2 375 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 BAIAP2L1Q9UHR4 511 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 ZNF337Q9Y3M9 751 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 TESMINQ9Y4I5 508 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 ROS1P08922 2347 aa17.11■□□□□ 0.33
VPS35-202ENST00000561713 ARID1AO14497 2285 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 A8MXE2 369 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 SIAH2O43255 324 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 SLITRK5O94991 958 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 ACP2P11117 423 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PEPDP12955 493 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PRPH2P23942 346 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 CCKARP32238 428 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PRKAG1P54619 331 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 KANK2Q63ZY3 851 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PPP4R4Q6NUP7 873 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 Q6ZSR9 355 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 CHMP1BQ7LBR1 199 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 LRRC75A-AS1Q8N1F1 130 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 MEIOBQ8N635 442 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 FNDC9Q8TBE3 224 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 GPR151Q8TDV0 419 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PPCDCQ96CD2 204 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 DTNBP1Q96EV8 351 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 FCRL1Q96LA6 429 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PIP5K1AQ99755 562 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 CCT7Q99832 543 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 KLHDC3Q9BQ90 382 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 TBL1XR1Q9BZK7 514 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 ACBD3Q9H3P7 528 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 PIGMQ9H3S5 423 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 VDAC3Q9Y277 283 aa17.1■□□□□ 0.33
VPS35-202ENST00000561713 MRPS18CQ9Y3D5 142 aaKnown RBP17.1■□□□□ 0.33
VPS35-202ENST00000561713 COL6A5A8TX70 2615 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 TLDC2A0PJX2 215 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 H3BQF6 201 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 SLC28A1O00337 649 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 RGS14O43566 566 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 ANGPTL1O95841 491 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 RNF144AP50876 292 aaPredicted RBP17.09■□□□□ 0.33
VPS35-202ENST00000561713 NAA20P61599 178 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 SLC18A2Q05940 514 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 FAM27E3Q08E93 113 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 RFTN2Q52LD8 501 aaPredicted RBP17.09■□□□□ 0.33
VPS35-202ENST00000561713 FIGNL1Q6PIW4 674 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 ZCCHC23Q6ZST2 131 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 DDIASQ8IXT1 998 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 PIGTQ969N2 578 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 STARD4Q96DR4 205 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 APOPT1Q96IL0 206 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 FAM111AQ96PZ2 611 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 NPAS1Q99742 590 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 REEP4Q9H6H4 257 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 KLHL28Q9NXS3 571 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 SH3BP4Q9P0V3 963 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 SLC17A7Q9P2U7 560 aa17.09■□□□□ 0.33
VPS35-202ENST00000561713 CSPG4Q6UVK1 2322 aa17.08■□□□□ 0.33
VPS35-202ENST00000561713 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 TRIM64A6NGJ6 449 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 TRIM64BA6NI03 449 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 DEFB108AA8MXU0 73 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 LSM1O15116 133 aaKnown RBP17.08■□□□□ 0.32
VPS35-202ENST00000561713 SPAG7O75391 227 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 KCNH1O95259 989 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 PRPS2P11908 318 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 NEFHP12036 1026 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 ALDH3A1P30838 453 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 DIO3P55073 304 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 GANABQ14697 944 aaKnown RBP17.08■□□□□ 0.32
VPS35-202ENST00000561713 PON3Q15166 354 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 BTLAQ7Z6A9 289 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 YTHDF3Q7Z739 585 aaKnown RBP17.08■□□□□ 0.32
VPS35-202ENST00000561713 NUP43Q8NFH3 380 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 TWIST2Q8WVJ9 160 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 JADE3Q92613 823 aa17.08■□□□□ 0.32
VPS35-202ENST00000561713 GIMAP5Q96F15 307 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms