RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FCMRO60667 390 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 UGDHO60701 494 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 SLCO2B1O94956 709 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ZNF30P17039 623 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 TPBGQ13641 420 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 GRM7Q14831 915 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 NDUFAF5Q5TEU4 345 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 C17orf107Q6ZR85 190 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 MS4A15Q8N5U1 240 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 OR8K3Q8NH51 312 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 MOSPD2Q8NHP6 518 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 RFKQ969G6 155 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 NKX3-1Q99801 234 aaPredicted RBP10.62□□□□□ -0.71
LDLR-208ENST00000558518 DPH7Q9BTV6 452 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 BTBD1Q9H0C5 482 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 HCFC1R1Q9NWW0 138 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 COPS3Q9UNS2 423 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 TRDV1A0A1B0GX56 115 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ERI3O43414 337 aaKnown RBP10.62□□□□□ -0.71
LDLR-208ENST00000558518 CYBAP13498 195 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 BMP7P18075 431 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 NTSP30990 170 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 PSMB10P40306 273 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 OR12D2P58182 307 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 CST9Q5W186 159 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 SFXN4Q6P4A7 337 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.62□□□□□ -0.71
LDLR-208ENST00000558518 DUSP18Q8NEJ0 188 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 OR56A3Q8NH54 315 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ADAMTS19Q8TE59 1207 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 SOCS4Q8WXH5 440 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 OR5P2Q8WZ92 322 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 TM4SF18Q96CE8 201 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 C4orf36Q96KX1 117 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 HHIPQ96QV1 700 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 KCNN2Q9H2S1 579 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ZFP64Q9NPA5 681 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 SF3B6Q9Y3B4 125 aaKnown RBP10.62□□□□□ -0.71
LDLR-208ENST00000558518 Q9Y3F1 56 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 WNT6Q9Y6F9 365 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 SLC16A5O15375 505 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 RNF13O43567 381 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 EFCAB14O75071 495 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 RGS9O75916 674 aaPredicted RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 LRG1P02750 347 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 TFP02787 698 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 ACADMP11310 421 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 TGM3Q08188 693 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 LTB4RQ15722 352 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 MINDY4Q4G0A6 757 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 CPA6Q8N4T0 437 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 ACBD7Q8N6N7 88 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 OR5W2Q8NH69 310 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 RBPMSQ93062 196 aaKnown RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 OTUB2Q96DC9 234 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 CXorf58Q96LI9 332 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 ERMAPQ96PL5 475 aaPredicted RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 HCAR1Q9BXC0 346 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 DIABLOQ9NR28 239 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 USP36Q9P275 1121 aaKnown RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 TESQ9UGI8 421 aaKnown RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 BAIAP2Q9UQB8 552 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 HELZP42694 1942 aaKnown RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 NRG2O14511 850 aaPredicted RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 HOXB3P14651 431 aaPredicted RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 NUP62P37198 522 aaPredicted RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 PXNP49023 591 aaPredicted RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 CDKL4Q5MAI5 379 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 TIGD3Q6B0B8 471 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.61□□□□□ -0.719e-8■■■■□ 21.8
LDLR-208ENST00000558518 GAREM2Q75VX8 874 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 TBC1D19Q8N5T2 526 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 PCSK9Q8NBP7 692 aaKnown RBP10.61□□□□□ -0.71
LDLR-208ENST00000558518 C17orf47Q8NEP4 570 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 OR2A12Q8NGT7 310 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 ING5Q8WYH8 240 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 FBXW5Q969U6 566 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 GLIPR2Q9H4G4 154 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 KLHL28Q9NXS3 571 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 NUP50Q9UKX7 468 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 SLC7A7Q9UM01 511 aa10.61□□□□□ -0.71
LDLR-208ENST00000558518 TRAV27A0A087WT01 109 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TMEM189-UBE2V1I3L0A0 370 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 LEFTY2O00292 366 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 GPR171O14626 319 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ADAMTS4O75173 837 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 RPP14O95059 124 aaKnown RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 SPDEFO95238 335 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 WNT1P04628 370 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 AHCYP23526 432 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 SLC6A1P30531 599 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 TRHRP34981 398 aaPredicted RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 IFNGR2P38484 337 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 MC3RP41968 323 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 RPL35P42766 123 aaKnown RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 TAGLNQ01995 201 aaKnown RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 MELKQ14680 651 aa10.6□□□□□ -0.71
LDLR-208ENST00000558518 ATXN7L3Q14CW9 347 aaPredicted RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 PRPF38BQ5VTL8 546 aaKnown RBP10.6□□□□□ -0.71
LDLR-208ENST00000558518 KHDRBS2Q5VWX1 349 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms