RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C10orf90Q96M02 699 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SERINC2Q96SA4 455 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 FAM212BQ9NTI7 297 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ING3Q9NXR8 418 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 IL20Q9NYY1 176 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 KCMF1Q9P0J7 381 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 POLR3HQ9Y535 204 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 KCNMB2Q9Y691 235 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CLCA3PQ9Y6N3 262 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TRIM77I1YAP6 450 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SMIM18P0DKX4 95 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 FGF5P12034 268 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 PTAFRP25105 342 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 OPRL1P41146 370 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC15A1P46059 708 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ASMTP46597 345 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 HTR6P50406 440 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 OR2B6P58173 313 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 MRPS22P82650 360 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 POU4F3Q15319 338 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 RNF151Q2KHN1 245 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 PAPD4Q6PIY7 484 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C17orf107Q6ZR85 190 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 NLRC3Q7RTR2 1065 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 MRGPREQ86SM8 312 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ULK2Q8IYT8 1036 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CLYBLQ8N0X4 340 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 UBE2J2Q8N2K1 259 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 OR4F6Q8NGB9 312 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TBC1D15Q8TC07 691 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 DCAKDQ8WVC6 231 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 DDA1Q9BW61 102 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 IFT27Q9BW83 186 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC6A15Q9H2J7 730 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SRPK3Q9UPE1 567 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CSPG4Q6UVK1 2322 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 A0A087WV48 116 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 NUDT7P0C024 238 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 LINC00032P0C843 101 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 MPC1LP0DKB6 136 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CASP2P42575 452 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ARSFP54793 590 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 AP1S2P56377 157 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 DEFA5Q01523 94 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 SLAMF1Q13291 335 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CLINT1Q14677 625 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 PRAMEF20Q5VT98 475 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 KHDRBS2Q5VWX1 349 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 FAM198BQ6UWH4 519 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 GPR180Q86V85 440 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ATCAYQ86WG3 371 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 PAQR7Q86WK9 346 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 TIGD4Q8IY51 512 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 MREGQ8N565 214 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 ZNF614Q8N883 585 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C11orf65Q8NCR3 313 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 C2CD4CQ8TF44 421 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CKAP2Q8WWK9 683 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 GATAD2BQ8WXI9 593 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 DPH1Q9BZG8 443 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 CD244Q9BZW8 370 aa7.36□□□□□ -1.23
LIMCH1-219ENST00000514096 OR2A25A4D2G3 310 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 C4orf51C9J302 202 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 DNAJA2O60884 412 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MITFO75030 526 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CHRNGP07510 517 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 T-ENOLP0DO92 83 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 CD22P20273 847 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TRAP1Q12931 704 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 IQCCQ4KMZ1 466 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 DCAF10Q5QP82 559 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SPINK14Q6IE38 97 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 OR5M10Q6IEU7 315 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 RHBDD2Q6NTF9 364 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MED27Q6P2C8 311 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 IL20RBQ6UXL0 311 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 HMGN2P46Q86SG4 172 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 C10orf107Q8IVU9 208 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 KLHDC8BQ8IXV7 354 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 OR7G3Q8NG95 312 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TCP10LQ8TDR4 215 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 KIAA1191Q96A73 305 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TUBGCP3Q96CW5 907 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MARK4Q96L34 752 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TSSK3Q96PN8 268 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 MAPKAP1Q9BPZ7 522 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 NUDT16L1Q9BRJ7 211 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 VN1R1Q9GZP7 353 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 DERL2Q9GZP9 239 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC25A18Q9H1K4 315 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 EXO5Q9H790 373 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 LIN7BQ9HAP6 207 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TMEM184CQ9NVA4 438 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SH3BP4Q9P0V3 963 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 TRAF6Q9Y4K3 522 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 OARD1Q9Y530 152 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SESN1Q9Y6P5 492 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 SPENQ96T58 3664 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 A8MT66 165 aa7.35□□□□□ -1.23
LIMCH1-219ENST00000514096 GPR37O15354 613 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms