RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OR51I1Q9H343 314 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 EXD2Q9NVH0 621 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 CCDC167Q9P0B6 97 aa19.78■□□□□ 0.76
CLN3-207ENST00000395653 WIPF3A6NGB9 483 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 NPIPA2E9PIF3 369 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 NPIPA3F8WFD2 350 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 CCL21O00585 134 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 ANGPTL1O95841 491 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 GSNP06396 782 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 SRD5A2P31213 254 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 TRPC1P48995 793 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 KHKP50053 298 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 TXNL4AP83876 142 aaKnown RBP19.77■□□□□ 0.76
CLN3-207ENST00000395653 HEPHL1Q6MZM0 1159 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 APOOLQ6UXV4 268 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 FADS6Q8N9I5 356 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 FAM83FQ8NEG4 500 aaPredicted RBP19.77■□□□□ 0.76
CLN3-207ENST00000395653 OR4K17Q8NGC6 315 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 PHF12Q96QT6 1004 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 TMEM120AQ9BXJ8 343 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 OR2B2Q9GZK3 357 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 HOXD1Q9GZZ0 328 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 SPRR3Q9UBC9 169 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 FBXL2Q9UKC9 423 aa19.77■□□□□ 0.76
CLN3-207ENST00000395653 IGLV3-32A0A0A0MS00 114 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 A0A1W2PQD3 144 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 C17orf51A8MQB3 221 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 B4DXG7 233 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ZIC2O95409 532 aaPredicted RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 OR12D1P0DN82 309 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 NCF2P19878 526 aaPredicted RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 C17orf67Q0P5P2 114 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 STX5Q13190 355 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ARHGAP11BQ3KRB8 267 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 OR5M10Q6IEU7 315 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 CGB2Q6NT52 195 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 MTFR2Q6P444 385 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 RNF130Q86XS8 419 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 EID3Q8N140 333 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 GTF2H4Q92759 462 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 SPDL1Q96EA4 605 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 SDF2Q99470 211 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 TP63Q9H3D4 680 aaPredicted RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 ZNF385DQ9H6B1 395 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 SUCOQ9UBS9 1254 aaKnown RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 MRPS18CQ9Y3D5 142 aaKnown RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 DOPEY1Q5JWR5 2465 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 SCDO00767 359 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ANP32DO95626 131 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 KRT75O95678 551 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 HPGDP15428 266 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 MAGEA8P43361 318 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ANXA11P50995 505 aaKnown RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 CASP9P55211 416 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 GTF3C1Q12789 2109 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 GXYLT1Q4G148 440 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 EIPR1Q53HC9 387 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 NHSL2Q5HYW2 709 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 EMC4Q5J8M3 183 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 WIPI1Q5MNZ9 446 aaPredicted RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 C6orf10Q5SRN2 563 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ATAD3BQ5T9A4 648 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 TNFAIP8L2Q6P589 184 aaPredicted RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 DNAJC14Q6Y2X3 702 aaPredicted RBP19.76■□□□□ 0.75
CLN3-207ENST00000395653 MISPQ8IVT2 679 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 OR2M3Q8NG83 312 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ZFP90Q8TF47 636 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 DUSP19Q8WTR2 217 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 SLC52A3Q9NQ40 469 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 SLC6A13Q9NSD5 602 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 ACAD8Q9UKU7 415 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 MEMO1Q9Y316 297 aa19.76■□□□□ 0.75
CLN3-207ENST00000395653 E9PLN8 166 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 NPIPB9F8W1W9 429 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 NR5A2O00482 541 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 NDUFB5O43674 189 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 C1QCP02747 245 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 GUSBP08236 651 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 ESRRAP11474 423 aaPredicted RBP19.75■□□□□ 0.75
CLN3-207ENST00000395653 DCTP40126 519 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 ARFIP2P53365 341 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 DSCR4P56555 118 aaPredicted RBP19.75■□□□□ 0.75
CLN3-207ENST00000395653 FLYWCH1Q4VC44 716 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 AGKQ53H12 422 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 WLSQ5T9L3 541 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 SLC2A7Q6PXP3 512 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 C16orf62Q7Z3J2 963 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 YRDCQ86U90 279 aaKnown RBP19.75■□□□□ 0.75
CLN3-207ENST00000395653 ZNF527Q8NB42 609 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 XAGE5Q8WWM1 108 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 RAB8BQ92930 207 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 ZNF317Q96PQ6 595 aaPredicted RBP19.75■□□□□ 0.75
CLN3-207ENST00000395653 VKORC1Q9BQB6 163 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 ZNF350Q9GZX5 532 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 DSN1Q9H410 356 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 PTGES2Q9H7Z7 377 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 PNPLA3Q9NST1 481 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 TNFRSF10DQ9UBN6 386 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 DKKL1Q9UK85 242 aa19.75■□□□□ 0.75
CLN3-207ENST00000395653 DNAJC13O75165 2243 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms