RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 RPS3AP61247 264 aaKnown RBP13.99□□□□□ -0.17
GPC3-202ENST00000394299 POU6F2P78424 691 aaPredicted RBP13.99□□□□□ -0.17
GPC3-202ENST00000394299 ZNF267Q14586 743 aaPredicted RBP13.99□□□□□ -0.17
GPC3-202ENST00000394299 AMZ1Q400G9 498 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 SYT14P1Q58G82 188 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 MFSD4BQ5TF39 518 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 SLC34A3Q8N130 599 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 CADM4Q8NFZ8 388 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 RIT1Q92963 219 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 RBM18Q96H35 190 aaKnown RBP13.99□□□□□ -0.17
GPC3-202ENST00000394299 SPACA7Q96KW9 195 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 CDX2Q99626 313 aaPredicted RBP13.99□□□□□ -0.17
GPC3-202ENST00000394299 PRSS27Q9BQR3 290 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 CDCA4Q9BXL8 241 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 PRDM9Q9NQV7 894 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 CARD8Q9Y2G2 431 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 RNF215Q9Y6U7 377 aa13.99□□□□□ -0.17
GPC3-202ENST00000394299 KPNA4O00629 521 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 CNOT3O75175 753 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 FNTBP49356 437 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 RGS6P49758 472 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 CLK1P49759 484 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 EFNB1P98172 346 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 TSPAN31Q12999 210 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 TSTQ16762 297 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 TSSK4Q6SA08 328 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 SNX29P2Q8IUI4 249 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 AMER2Q8N7J2 671 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 PFN4Q8NHR9 129 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 ACOT11Q8WXI4 607 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 FCGR1BQ92637 280 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 FGF11Q92914 225 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 ZNF582Q96NG8 517 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 MGLLQ99685 303 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 CHCHD6Q9BRQ6 235 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 CENPOQ9BU64 300 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 TBC1D17Q9HA65 648 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 CNOT2Q9NZN8 540 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 LRIT1Q9P2V4 623 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 LMO7DNF2Z398 122 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 HRO43593 1189 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 SLC2A10O95528 541 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 RNH1P13489 461 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 NID1P14543 1247 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 RPS4Y1P22090 263 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 CFHR1Q03591 330 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 OR1Q1Q15612 314 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 ZNF829Q3KNS6 432 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 TBC1D25Q3MII6 688 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 TMEM201Q5SNT2 666 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 PDZK1Q5T2W1 519 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 SHFQ7M4L6 423 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 C17orf82Q86X59 251 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 Q8N9G6 341 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 OR4Q3Q8NH05 313 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 PIGXQ8TBF5 258 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 TRUB1Q8WWH5 349 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 CNOT9Q92600 299 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 ZHX1-C8orf76Q96EF9 292 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 SH3YL1Q96HL8 342 aaPredicted RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 CNPPD1Q9BV87 410 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 POLDIP3Q9BY77 421 aaKnown RBP13.98□□□□□ -0.17
GPC3-202ENST00000394299 ENKD1Q9H0I2 346 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 ATP13A2Q9NQ11 1180 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 PRTFDC1Q9NRG1 225 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 C20orf141Q9NUB4 165 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 WNT16Q9UBV4 365 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 UNC13CQ8NB66 2214 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 WDFY3Q8IZQ1 3526 aa13.98□□□□□ -0.17
GPC3-202ENST00000394299 TMEM131Q92545 1883 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 CDHR4A6H8M9 788 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 RHPN2P1A8MT19 583 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 A8MU76 341 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 WWP2O00308 870 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 KIAA0513O60268 411 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 BRINP1O60477 761 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 DBIP07108 87 aaKnown RBP13.97□□□□□ -0.17
GPC3-202ENST00000394299 IDUAP35475 653 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 SOX3P41225 446 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 C21orf59P57076 290 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 HNRNPKP61978 463 aaKnown RBP eCLIP13.97□□□□□ -0.176e-7■■□□□ 12.9
GPC3-202ENST00000394299 DECR1Q16698 335 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 LINC00471Q8N535 108 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 FAM26EQ8N5C1 309 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 FAM174AQ8TBP5 190 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 TEX47Q8TBZ9 253 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 PTCHD1Q96NR3 888 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 STACQ99469 402 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 DCSTAMPQ9H295 470 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 TRIM45Q9H8W5 580 aaPredicted RBP13.97□□□□□ -0.17
GPC3-202ENST00000394299 CACYBPQ9HB71 228 aaKnown RBP13.97□□□□□ -0.17
GPC3-202ENST00000394299 FOLH1BQ9HBA9 442 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 CACNA1IQ9P0X4 2223 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 CTNSO60931 367 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 NKX2-2O95096 273 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 GSTM3P21266 225 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 ALAS2P22557 587 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 OR1D4P47884 311 aa13.97□□□□□ -0.17
GPC3-202ENST00000394299 SMSP52788 366 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms