RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TCRBV9S1A1TA0A576 114 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 OR7A17O14581 309 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 EIF1AYO14602 144 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 SSX4O60224 188 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 SIX3O95343 332 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 CD8AP01732 235 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ARL1P40616 181 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 EIF1AXP47813 144 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ALDH9A1P49189 494 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 TRA2BP62995 288 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ZNF844Q08AG5 666 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 FAPQ12884 760 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 IFT88Q13099 833 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ACAP2Q15057 778 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 WHAMMP3Q1A5X7 153 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ERCC6LQ2NKX8 1250 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 TMEM249Q2WGJ8 235 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 TTC19Q6DKK2 380 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 PPP4R4Q6NUP7 873 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 C3orf62Q6ZUJ4 267 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 SLC44A2Q8IWA5 706 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 KLHL7Q8IXQ5 586 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 OR52B6Q8NGF0 335 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 KCTD4Q8WVF5 259 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 HSD17B8Q92506 261 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 KAT2AQ92830 837 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 TNFRSF13CQ96RJ3 184 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 TRAF4Q9BUZ4 470 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 RTN4RQ9BZR6 473 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 TRIM31Q9BZY9 425 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 FOLH1BQ9HBA9 442 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 UTS2RQ9UKP6 389 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 MCTS1Q9ULC4 181 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 OR10H1Q9Y4A9 318 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 ANK2Q01484 3957 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 PCNX3Q9H6A9 2034 aa10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLSTN3-209ENST00000539982 IGHV4-30-2A0A087WSY4 118 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 A0A096LNT2 108 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 ADH6P28332 368 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 CLK3P49761 638 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 CCNG1P51959 295 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 VLDLRP98155 873 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 LOXL1Q08397 574 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 GALNT1Q10472 559 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 STX5Q13190 355 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 NRF1Q16656 503 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 FAM83EQ2M2I3 478 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 TMEM44Q2T9K0 475 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 GTF2IRD2BQ6EKJ0 949 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 MFSD12Q6NUT3 480 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 GTF2IRD2Q86UP8 949 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 CTAGE3PQ8IX95 158 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 CENPLQ8N0S6 344 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 OR10H5Q8NGA6 315 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 OR10D3Q8NH80 312 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 SHARPINQ9H0F6 387 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 ALG2Q9H553 416 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 PFDN4Q9NQP4 134 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 TAS2R9Q9NYW1 312 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 ABCG2Q9UNQ0 655 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 SLC12A4Q9UP95 1085 aa10.37□□□□□ -0.75
CLSTN3-209ENST00000539982 FAM234BA2RU67 622 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 ADAMDEC1O15204 470 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 PLOD3O60568 738 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 GCM2O75603 506 aaPredicted RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 SYNGR4O95473 234 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 TUBBP07437 444 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 GSTA2P09210 222 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 CTAGE8P0CG41 777 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 DSCR9P59020 149 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 PSG6Q00889 435 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 CKAP4Q07065 602 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 TAB1Q15750 504 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 CYP27C1Q4G0S4 372 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 SGO1Q5FBB7 561 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 SFRP5Q5T4F7 317 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 LGSNQ5TDP6 509 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 FIGNL1Q6PIW4 674 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 CCDC91Q7Z6B0 441 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 MARCH3Q86UD3 253 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 DTX2Q86UW9 622 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 WDR75Q8IWA0 830 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 CTAGE4Q8IX94 777 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 SAMD14Q8IZD0 417 aaPredicted RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 GABRG1Q8N1C3 465 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 PPM1NQ8N819 430 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 OR9A2Q8NGT5 310 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 PIWIL2Q8TC59 973 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 MTBPQ96DY7 904 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 USB1Q9BQ65 265 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 TRIM2Q9C040 744 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 ELOVL6Q9H5J4 265 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 C12orf49Q9H741 205 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 FBXO34Q9NWN3 711 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 NMRK1Q9NWW6 199 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 FAM120CQ9NX05 1096 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 CISD1Q9NZ45 108 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 FLRT3Q9NZU0 649 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms