RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 FAM222BQ8WU58 562 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 OR5P2Q8WZ92 322 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 ANKRD9Q96BM1 317 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 CNRIP1Q96F85 164 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 DEFB127Q9H1M4 99 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 IL1RL2Q9HB29 575 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 PNO1Q9NRX1 252 aaKnown RBP11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 LANCL2Q9NS86 450 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 ACSS1Q9NUB1 689 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 NDE1Q9NXR1 346 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 BTNL2Q9UIR0 455 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 CES1P1Q9UKY3 287 aa11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 KLF13Q9Y2Y9 288 aaPredicted RBP11.47□□□□□ -0.57
CLSTN3-208ENST00000538933 MYO1GB0I1T2 1018 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 NPIPA2E9PIF3 369 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 NPIPA3F8WFD2 350 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 KLRC4-KLRK1H3BQV0 150 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 HNRNPCL1O60812 293 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 CHI3L1P36222 383 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 RASSF2P50749 326 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 OR4D2P58180 307 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 RHAGQ02094 409 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 ZNF750Q32MQ0 723 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 COQ5Q5HYK3 327 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 C6orf89Q6UWU4 347 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 ZNF621Q6ZSS3 439 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 ZNF551Q7Z340 670 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 SCUBE1Q8IWY4 988 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 ST13P4Q8IZP2 240 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 CLECL1Q8IZS7 167 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 PLPP5Q8NEB5 264 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 OR5M9Q8NGP3 310 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 TSLPQ969D9 159 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 GLIPR2Q9H4G4 154 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 C3orf14Q9HBI5 128 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 NECTIN3Q9NQS3 549 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 TAS2R9Q9NYW1 312 aa11.46□□□□□ -0.57
CLSTN3-208ENST00000538933 ERICH4A6NGS2 130 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 A8MUA0 341 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 B2RBV5 119 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 H7C1Q1 480 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 GSNP06396 782 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 KRT16P08779 473 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC35E2P0CK97 266 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 STT3AP46977 705 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 TRPC1P48995 793 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 WNT3P56703 355 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 DCAF7P61962 342 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 PHC1P78364 1004 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 PRR5P85299 388 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 MLC1Q15049 377 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 ZSCAN26Q16670 478 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 PRSS53Q2L4Q9 553 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 TRMT5Q32P41 509 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 PAGE3Q5JUK9 113 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 C16orf89Q6UX73 402 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 B3GNT6Q6ZMB0 384 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 MDGA2Q7Z553 956 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 PHC2Q8IXK0 858 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 GALNT12Q8IXK2 581 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 ADCY4Q8NFM4 1077 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 OR9A2Q8NGT5 310 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 GTF2H4Q92759 462 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 RIT1Q92963 219 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 TMEM125Q96AQ2 219 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 ART5Q96L15 291 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 CCDC115Q96NT0 180 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 AMDHD1Q96NU7 426 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 LPAR4Q99677 370 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 INPP5KQ9BT40 448 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 CNPPD1Q9BV87 410 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 ZDHHC11Q9H8X9 412 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 ADAP2Q9NPF8 381 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 DEPPQ9NTK1 212 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 DDX18Q9NVP1 670 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 BEX4Q9NWD9 120 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 CLCA3PQ9Y6N3 262 aa11.45□□□□□ -0.58
CLSTN3-208ENST00000538933 A0A096LPI6 279 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 A0A1W2PPR1 153 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 A0A1W2PS29 197 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 TCRBV16S1A1N1A0A5B0 115 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 PINLYPA6NC86 204 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 FBP2O00757 339 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 ERN1O75460 977 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 SLITRK5O94991 958 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 ATP1B1P05026 303 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 UQCRC2P22695 453 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 PEX19P40855 299 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 PRKAG1P54619 331 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 HBA1P69905 142 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 IGLV3-21P80748 117 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNF267Q14586 743 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 LTB4RQ15722 352 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 MPEG1Q2M385 716 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 BHLHB9Q6PI77 547 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 TMEM107Q6UX40 140 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 RETREG3Q86VR2 466 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 DPP10Q8N608 796 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 OR14A16Q8NHC5 309 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms