RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 GIMD1P0DJR0 217 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 FOLR1P15328 257 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 SHC2P98077 582 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GALNT1Q10472 559 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 C18orf63Q68DL7 685 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 MTFR2Q6P444 385 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 C17orf107Q6ZR85 190 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TAGAPQ8N103 731 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC37A3Q8NCC5 494 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 WDR20Q8TBZ3 569 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 DYNC2LI1Q8TCX1 351 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CIDECQ96AQ7 238 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 FKBP10Q96AY3 582 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 BBS4Q96RK4 519 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RBM4BQ9BQ04 359 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RBM4Q9BWF3 364 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 NLNQ9BYT8 704 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RACGAP1Q9H0H5 632 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PARD6AQ9NPB6 346 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GPRC5BQ9NZH0 403 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 KCNE1BA0A087WTH5 132 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RAB19A4D1S5 217 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 SCO2O43819 266 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 LDB3O75112 727 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 OPN1SWP03999 348 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 IFNA16P05015 189 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RAP2AP10114 183 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TNFRSF1BP20333 461 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CPN2P22792 545 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CD1CP29017 333 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 STXBP1P61764 594 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 REEP5Q00765 189 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 BAK1Q16611 211 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 MAPKAPK3Q16644 382 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CLECL1Q8IZS7 167 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CYP4Z2PQ8N1L4 340 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CAMKVQ8NCB2 501 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RASSF5Q8WWW0 418 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GTPBP3Q969Y2 492 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TESCQ96BS2 214 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CCDC74BQ96LY2 380 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 SNX18Q96RF0 628 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 YIPF4Q9BSR8 244 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TMEM121BQ9BXQ6 578 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 UGT2B28Q9BY64 529 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 LRRN3Q9H3W5 708 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ERVMER34-1Q9H9K5 563 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GALNT9Q9HCQ5 603 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GPR27Q9NS67 375 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PISDQ9UG56 409 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ENTPD2Q9Y5L3 495 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TEX51A0A1B0GUA7 166 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TRBC2A0A5B9 178 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 H0YIV9 168 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 LGALS8O00214 317 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 SMAD9O15198 467 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 MSL3P1P0C860 447 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 MAPK1P28482 360 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TNFSF8P32971 234 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 RPS15AP62244 130 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ADARB1P78563 741 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CFHR1Q03591 330 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PUDPQ08623 228 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 IL18Q14116 193 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GNA13Q14344 377 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TATDN3Q17R31 274 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF181Q2M3W8 571 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 C3orf38Q5JPI3 329 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 NDUFAF5Q5TEU4 345 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 VN1R5Q7Z5H4 357 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 VTCN1Q7Z7D3 282 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TMEM179BQ7Z7N9 219 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 GLRX5Q86SX6 157 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 NUDT13Q86X67 352 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 KBTBD8Q8NFY9 601 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 BAHD1Q8TBE0 780 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PPCDCQ96CD2 204 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ST6GAL2Q96JF0 529 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PANX1Q96RD7 426 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ITPAQ9BY32 194 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 KCNH6Q9H252 994 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PELI2Q9HAT8 420 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ANKHQ9HCJ1 492 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 FANCFQ9NPI8 374 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TRPC4Q9UBN4 977 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 LEF1Q9UJU2 399 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 ACSL6Q9UKU0 697 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 TLCD2A6NGC4 264 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 EFCAB7A8K855 629 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 VPS4BO75351 444 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 GABARAPO95166 117 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CDRT1O95170 752 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 GLAP06280 429 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 LAMP1P11279 417 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 PEPDP12955 493 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 CCL4P13236 92 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 TIA1P31483 386 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 SOX3P41225 446 aa8.12□□□□□ -1.11
LIMCH1-209ENST00000509277 AP2S1P53680 142 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms