RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 OSBPL8Q9BZF1 889 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 TSGA10Q9BZW7 698 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 RRAGDQ9NQL2 400 aaPredicted RBP3.58□□□□□ -1.84
USP54-217ENST00000498213 ARL15Q9NXU5 204 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 SMARCAL1Q9NZC9 954 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 SELENONQ9NZV5 590 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 IFNKQ9P0W0 207 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 DHCR7Q9UBM7 475 aaKnown RBP3.58□□□□□ -1.84
USP54-217ENST00000498213 PYCARDQ9ULZ3 195 aa3.58□□□□□ -1.84
USP54-217ENST00000498213 SAC3D1A6NKF1 404 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 AQP12BA6NM10 295 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 EFCAB8A8MWE9 144 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 PRR23D1E9PI22 279 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 H7C0C1 242 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SLC16A5O15375 505 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 NME2P1O60361 137 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 WDR1O75083 606 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 PSIP1O75475 530 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 NEURL1O76050 574 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 VENTXO95231 258 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 C1orf105O95561 183 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 WDPCPO95876 746 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 AGTP01019 485 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SP1P08047 785 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SLC35G6P0C7Q6 338 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 PRR23D2P0DMB1 279 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 SPTBP11277 2137 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 GABRA1P14867 456 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ZNF24P17028 368 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 OGNP20774 298 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 ZNF10P21506 573 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 PDHA2P29803 388 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 PBLDP30039 288 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 CYLC1P35663 651 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 ATP5OP48047 213 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 RFX2P48378 723 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 NPY2RP49146 381 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 HLCSP50747 726 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 FAM3BP58499 235 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 EIF3EP60228 445 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 PSPHP78330 225 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 CCZ1BP86790 482 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 CCZ1P86791 482 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 ROR2Q01974 943 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 EGR4Q05215 589 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 PRKG2Q13237 762 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 CAPRIN1Q14444 709 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 RPS6KA1Q15418 735 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 HYAL4Q2M3T9 481 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 TYSND1Q2T9J0 566 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 FBXL19-AS1Q494R0 122 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SLC25A25Q6KCM7 469 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 UGT3A1Q6NUS8 523 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 CASC4Q6P4E1 433 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 QSOX2Q6ZRP7 698 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 DET1Q7L5Y6 550 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 MDGA2Q7Z553 956 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 CPEB2Q7Z5Q1 589 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 CCDC50Q8IVM0 306 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SIAH3Q8IW03 269 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 C17orf53Q8N3J3 647 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 CSNK1A1LQ8N752 337 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 LINC01555Q8NAE3 123 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ZNF527Q8NB42 609 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ZFP62Q8NB50 900 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 TTLQ8NG68 377 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 OR9A1PQ8NGU1 263 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 LINC01560Q8TB33 94 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 FAM57AQ8TBR7 257 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ACTL9Q8TC94 416 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 MAIP1Q8WWC4 291 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ATL1Q8WXF7 558 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 KCNJ9Q92806 393 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 NEUROG1Q92886 237 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 PIGTQ969N2 578 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ZBED6CLQ96FA7 236 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 CABS1Q96KC9 395 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 ELAC2Q9BQ52 826 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 TRIM51Q9BSJ1 452 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 HAUS8Q9BT25 410 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 MECRQ9BV79 373 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 HES7Q9BYE0 225 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SHARPINQ9H0F6 387 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 SLCO5A1Q9H2Y9 848 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 MAP6D1Q9H9H5 199 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 NHEJ1Q9H9Q4 299 aaPredicted RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 ZNF160Q9HCG1 818 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 MRPS30Q9NP92 439 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 PNRC2Q9NPJ4 139 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 KLHL1Q9NR64 748 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 INTS10Q9NVR2 710 aaKnown RBP3.57□□□□□ -1.84
USP54-217ENST00000498213 QPCTLQ9NXS2 382 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 BFARQ9NZS9 450 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 TRPC4Q9UBN4 977 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 LRCH1Q9Y2L9 728 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 MMACHCQ9Y4U1 282 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 IKBKGQ9Y6K9 419 aa3.57□□□□□ -1.84
USP54-217ENST00000498213 A0A1B0GVC2 190 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 AGAP5A6NIR3 686 aa3.56□□□□□ -1.84
USP54-217ENST00000498213 E7EVH7 732 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms