RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 GLOD5A6NK44 160 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SYN3O14994 580 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CNTN5O94779 1100 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ACPPP15309 386 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PROZP22891 400 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 OR2T4Q8NH00 348 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM46AQ96IP4 442 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF331Q9NQX6 463 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PLSCR5A0PG75 271 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PTP4A2Q12974 167 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CNN3Q15417 329 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 MRPL21Q7Z2W9 205 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 KLK6Q92876 244 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 NIPAL2Q9H841 368 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 MAFBQ9Y5Q3 323 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PSAT1Q9Y617 370 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 G6PDP11413 515 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 KCNC3Q14003 757 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 HORMAD2Q8N7B1 307 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF586Q9NXT0 402 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 MYOTQ9UBF9 498 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PRKACGP22612 351 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 L1CAMP32004 1257 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 EMX2Q04743 252 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PLCXD2Q0VAA5 305 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CRMP1Q14194 572 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 LCN10Q6JVE6 187 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SBSNQ6UWP8 590 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC7A5P1Q8MH63 180 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SAP130Q9H0E3 1048 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 NIPSNAP2O75323 286 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ETV6P41212 452 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 PPP1R8Q12972 351 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF648Q5T619 568 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 OR52E2Q8NGJ4 325 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 HHIPL1Q96JK4 782 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ALG12Q9BV10 488 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SIDT1Q9NXL6 827 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CRYM-AS1A6NIL9 109 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 TRHRP34981 398 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ENPP6Q6UWR7 440 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SPARTQ8N0X7 666 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 OR5L1Q8NGL2 311 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 GIMAP1Q8WWP7 306 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 LIPHQ8WWY8 451 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 TARBP1Q13395 1621 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 GCH1P30793 250 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 BAXQ07812 192 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 OR5D14Q8NGL3 314 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 TEPSINQ96N21 525 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CMSS1Q9BQ75 279 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC35D1Q9NTN3 355 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CCM2LQ9NUG4 571 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC39A9Q9NUM3 307 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 FZD10Q9ULW2 581 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ANXA7P20073 488 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 AMTP48728 403 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 UBXN2BQ14CS0 331 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 STEAP2Q8NFT2 490 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 DMBX1Q8NFW5 382 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 CHAC2Q8WUX2 184 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 MUS81Q96NY9 551 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 OR10A5Q9H207 317 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 OR10A2Q9H208 303 aa12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 ATXN7L1Q9ULK2 861 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-204ENST00000413716 EDDM13A0A1B0GTR0 161 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 GAPDHSO14556 408 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 GMPRP36959 345 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 TAGLNQ01995 201 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 PAQR3Q6TCH7 311 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF34Q8IZ26 560 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM213BQ8TBF2 198 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 POM121CA8CG34 1229 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 PRSS44E7EML9 344 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 GBAP04062 536 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 GRM5P41594 1212 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 GPR4P46093 362 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 CES4AQ5XG92 561 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 LEG1Q6P5S2 330 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 TECPR1Q7Z6L1 1165 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 DCP2Q8IU60 420 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 WFIKKN2Q8TEU8 576 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 HERPUD2Q9BSE4 406 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 NUDT9Q9BW91 350 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF355PQ9NSJ1 428 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 SMOXQ9NWM0 555 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ZDHHC2Q9UIJ5 367 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 J3KR12 359 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ARPC1BO15143 372 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 DPM1O60762 260 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 JMJD7P0C870 316 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 STK19P49842 368 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 LYRM7Q5U5X0 104 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 GDPD4Q6W3E5 623 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 C2orf15Q8WU43 125 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 BLNKQ8WV28 456 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 THAP7Q9BT49 309 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 DPEP3Q9H4B8 488 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 TULP4Q9NRJ4 1543 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 SURF4O15260 269 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms