RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 DUSP22Q9NRW4 184 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 KLK14Q9P0G3 267 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CBLCQ9ULV8 474 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 COPS3Q9UNS2 423 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 GLYATL1P3A0A0U1RQE8 302 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 H0YIV9 168 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TO15178 435 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PEX10O60683 326 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CLEC9AQ6UXN8 241 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NUP54Q7Z3B4 507 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PLPP6Q8IY26 295 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NXPE1Q8N323 547 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LILRB2Q8N423 598 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FAM26EQ8N5C1 309 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 COMMD1Q8N668 190 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 OR2A12Q8NGT7 310 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SETD7Q8WTS6 366 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 BCL7CQ8WUZ0 217 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 DNAJB3Q8WWF6 145 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ELMOD3Q96FG2 381 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HMCESQ96FZ2 354 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 JSRP1Q96MG2 331 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 FAM103A1Q9BTL3 118 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 ATG5Q9H1Y0 275 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CWH43Q9H720 699 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LSM5Q9Y4Y9 91 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 POMT1Q9Y6A1 747 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CLDN4O14493 209 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ADORA3P0DMS8 318 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SSTR2P30874 369 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 RPIAP49247 311 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NR0B1P51843 470 aaKnown RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 ERVPABLB-1P60509 514 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 MLLT1Q03111 559 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 C2orf80Q0P641 193 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TNK1Q13470 666 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PLEKHN1Q494U1 663 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 CHRFAM7AQ494W8 412 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CRB2Q5IJ48 1285 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 BCL2L15Q5TBC7 163 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CST9LP1Q5W188 147 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 C22orf42Q6IC83 251 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 FBXL22Q6P050 247 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TTLL10Q6ZVT0 673 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 WDR53Q7Z5U6 358 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 ANKRD46Q86W74 232 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SAMD12Q8N8I0 201 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 OR5H6Q8NGV6 325 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NFKBIDQ8NI38 313 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.07□□□□□ -1.446e-7■■■□□ 16.7
VPS35-201ENST00000299138 TMEM163Q8TC26 289 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NETO1Q8TDF5 533 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ADAMTS15Q8TE58 950 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NPRL2Q8WTW4 380 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LIPHQ8WWY8 451 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LRIG1Q96JA1 1093 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ZNF701Q9NV72 531 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 SLC27A5Q9Y2P5 690 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TAF1P21675 1872 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LINC00862A6NCI5 91 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 C2orf78A6NCI8 922 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 MANSC4A6NHS7 340 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 SYT5O00445 386 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CLEC3BP05452 202 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 NAT2P11245 290 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CDK6Q00534 326 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SGCGQ13326 291 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PLK5Q496M5 336 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 PXDC1Q5TGL8 231 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SFRP4Q6FHJ7 346 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 FRMPD2BQ6IN97 320 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SERPINA13PQ6UXR4 307 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SLC36A4Q6YBV0 504 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 DBX2Q6ZNG2 339 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 KLHDC8AQ8IYD2 350 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TTLQ8NG68 377 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 OR52N1Q8NH53 320 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 GGHQ92820 318 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 DNAJA3Q96EY1 480 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HS6ST2Q96MM7 605 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 MFRPQ9BY79 579 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ZNF436Q9C0F3 470 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 ASB8Q9H765 288 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ATP13A2Q9NQ11 1180 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 KCNIP2Q9NS61 270 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CPA4Q9UI42 421 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 ADAM29Q9UKF5 820 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 A0A1W2PPK0 400 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HAS3O00219 553 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 LYRM1O43325 122 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 CLIC3O95833 236 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HDCP19113 662 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 MAPK3P27361 379 aaPredicted RBP6.07□□□□□ -1.44
VPS35-201ENST00000299138 TNFSF8P32971 234 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 HSPA7P48741 367 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 XKP51811 444 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 TAS2R50P59544 299 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 UBE2KP61086 200 aa6.07□□□□□ -1.44
VPS35-201ENST00000299138 SHC2P98077 582 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms