RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SEC14L3Q9UDX4 400 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 PHF11Q9UIL8 331 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 TRBV5-4A0A0C4DH59 114 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 A0A1B0GVI7 797 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 ARRDC5A6NEK1 342 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 GPR37L1O60883 481 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 SPDEFO95238 335 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 CORO1AP31146 461 aaKnown RBP12.65□□□□□ -0.38
SKA3-201ENST00000298260 ACVR1BP36896 505 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 NSG1P42857 185 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 FNTBP49356 437 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 FLT3LGP49771 235 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 MRPS6P82932 125 aaKnown RBP12.65□□□□□ -0.38
SKA3-201ENST00000298260 CDK5Q00535 292 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 ZNF763Q0D2J5 394 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 HTR4Q13639 388 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 ZNF613Q6PF04 617 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 RASGRP3Q8IV61 690 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 OR11G2Q8NGC1 345 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 OR6T1Q8NGN1 323 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 LRRC46Q96FV0 321 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 FNDC11Q9BVV2 318 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 PIPOXQ9P0Z9 390 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 PFDN2Q9UHV9 154 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 KIAA0100Q14667 2235 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 PRAMEF27A3QJZ7 478 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 NPIPB8E9PQR5 432 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 ARPC1BO15143 372 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 ACP5P13686 325 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 SPAM1P38567 509 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 EFNB1P98172 346 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 PRKCZQ05513 592 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 HBMQ6B0K9 141 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 AGTRAPQ6RW13 159 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 RSPO2Q6UXX9 243 aaPredicted RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 SLC36A4Q6YBV0 504 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 KRT78Q8N1N4 520 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 MRPS24Q96EL2 167 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 NARS2Q96I59 477 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 FAM46AQ96IP4 442 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 OR1F2PQ96R84 312 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 NRTNQ99748 197 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 ADAM2Q99965 735 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 ZNF649Q9BS31 505 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 FGF20Q9NP95 211 aaPredicted RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 TEX10Q9NXF1 929 aaPredicted RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 ZNF69Q9UC07 566 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 MRTO4Q9UKD2 239 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 PADI3Q9ULW8 664 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 NTNG1Q9Y2I2 539 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 TRABD2BA6NFA1 517 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 KRBOX1C9JBD0 128 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 INPPL1O15357 1258 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 MAGEB4O15481 346 aaPredicted RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 ANXA7P20073 488 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 PURAQ00577 322 aaKnown RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 SERTAD2Q14140 314 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 HLXQ14774 488 aaPredicted RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 C16orf78Q8WTQ4 265 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 XAGE5Q8WWM1 108 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 ARMC5Q96C12 935 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 BHLHE41Q9C0J9 482 aaPredicted RBP12.64□□□□□ -0.39
SKA3-201ENST00000298260 ARL6Q9H0F7 186 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 BRD9Q9H8M2 597 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 CD93Q9NPY3 652 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 RCE1Q9Y256 329 aa12.64□□□□□ -0.39
SKA3-201ENST00000298260 PLSCR5A0PG75 271 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 RNF13O43567 381 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 ATG12O94817 140 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 FGF2P09038 288 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 GNSP15586 552 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 NFYAP23511 347 aaPredicted RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 TRIM23P36406 574 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 MAPK9P45984 424 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 RFX3P48380 749 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 AKR1C2P52895 323 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 AKR1C1Q04828 323 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 CTXN3Q4LDR2 81 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 LIPJQ5W064 366 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 C18orf63Q68DL7 685 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 HIST2H2AA3Q6FI13 130 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 SMARCD3Q6STE5 483 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 PRICKLE2Q7Z3G6 844 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 TRMT11Q7Z4G4 463 aaKnown RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 SERPINA12Q8IW75 414 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 APCDD1Q8J025 514 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 OR1S1Q8NH92 325 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 C2CD4CQ8TF44 421 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 SCAMP4Q969E2 229 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 FUZQ9BT04 418 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 TAAR2Q9P1P5 351 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 HCSTQ9UBK5 93 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 ASB4Q9Y574 426 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 KIF26AQ9ULI4 1882 aaPredicted RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 FXYD6-FXYD2A0A087WZ82 144 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 LINC00587B1AMM8 73 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 PRR23D1E9PI22 279 aaPredicted RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 M0QZ92 97 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 SUSD5O60279 629 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 PRR23D2P0DMB1 279 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms