RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 FAM95CA0A1B0GW59 222 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 VWC2LB2RUY7 222 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 E7EQL1 145 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 LINC01387J3KSC0 135 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 ABCD4O14678 606 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 NME6O75414 186 aaPredicted RBP12.9□□□□□ -0.34
CLN3-249ENST00000636685 TTC4O95801 387 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 CSF3P09919 207 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 CCDC166P0CW27 439 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 AGTR1P30556 359 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 EMDP50402 254 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 MAP4K2Q12851 820 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 STX5Q13190 355 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 EFR3AQ14156 821 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 TTC27Q6P3X3 843 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 LARP4Q71RC2 724 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLN3-249ENST00000636685 CCDC25Q86WR0 208 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 SEMA6DQ8NFY4 1073 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 OR52B6Q8NGF0 335 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 NXNL1Q96CM4 212 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 NAP1L3Q99457 506 aaPredicted RBP12.9□□□□□ -0.34
CLN3-249ENST00000636685 DESI2Q9BSY9 194 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 SOX7Q9BT81 388 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 CD274Q9NZQ7 290 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 GPR55Q9Y2T6 319 aaPredicted RBP12.9□□□□□ -0.34
CLN3-249ENST00000636685 PSAT1Q9Y617 370 aa12.9□□□□□ -0.34
CLN3-249ENST00000636685 IGHV4-61A0A0C4DH41 118 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 TUBBP07437 444 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 CREB1P16220 341 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 PIK3CBP42338 1070 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 EFNA4P52798 201 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 ARFIP1P53367 373 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 P2RY6Q15077 328 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 OR4D1Q15615 310 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 MSS51Q4VC12 460 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 TRMT12Q53H54 448 aaKnown RBP12.89□□□□□ -0.35
CLN3-249ENST00000636685 PRR31Q5SQ13 230 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 LGSNQ5TDP6 509 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 GRHL2Q6ISB3 625 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 TRMT10BQ6PF06 316 aaKnown RBP12.89□□□□□ -0.35
CLN3-249ENST00000636685 GALNT10Q86SR1 603 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 MUC15Q8N387 334 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 TXLNBQ8N3L3 684 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 OR10D3Q8NH80 312 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 ZFAND2BQ8WV99 257 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 MAIP1Q8WWC4 291 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 GCDHQ92947 438 aaPredicted RBP12.89□□□□□ -0.35
CLN3-249ENST00000636685 KISS1RQ969F8 398 aaPredicted RBP12.89□□□□□ -0.35
CLN3-249ENST00000636685 EFHD2Q96C19 240 aaPredicted RBP12.89□□□□□ -0.35
CLN3-249ENST00000636685 LRRC1Q9BTT6 524 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 POTEKPQ9BYX7 375 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 CD244Q9BZW8 370 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 DERL2Q9GZP9 239 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 OCEL1Q9H607 264 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 PRODH2Q9UF12 536 aa12.89□□□□□ -0.35
CLN3-249ENST00000636685 ESYT3A0FGR9 886 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 TMEM89A2RUT3 159 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 H7C417 338 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 CXCL13O43927 109 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 ADAP00813 363 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 OPN1LWP04000 364 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 COL6A2P12110 1019 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 PCSK2P16519 638 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 PTX3P26022 381 aaPredicted RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 IL12BP29460 328 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 FEN1P39748 380 aaKnown RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 NR4A2P43354 598 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 CORO7P57737 925 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 DUSP2Q05923 314 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 GANABQ14697 944 aaKnown RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 LTB4RQ15722 352 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 STK11Q15831 433 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 CDKL4Q5MAI5 379 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 TFAP2EQ6VUC0 442 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 BHLHA15Q7RTS1 189 aaPredicted RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 LRRC70Q7Z2Q7 622 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 NUFIP2Q7Z417 695 aaKnown RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 ZC3HC1Q86WB0 502 aaKnown RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 NUDT13Q86X67 352 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 FBXL14Q8N1E6 418 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 PDPRQ8NCN5 879 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 KAT2AQ92830 837 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 EXT2Q93063 718 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 C1GALT1C1Q96EU7 318 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 DHRS9Q9BPW9 319 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 RTN4RQ9BZR6 473 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 DDX47Q9H0S4 455 aaKnown RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 ANKRA2Q9H9E1 313 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 GLRX2Q9NS18 164 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 NPAP1Q9NZP6 1156 aa12.88□□□□□ -0.35
CLN3-249ENST00000636685 MCTS1Q9ULC4 181 aaKnown RBP12.88□□□□□ -0.35
CLN3-249ENST00000636685 SYNGR4O95473 234 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 CT45A8P0DMV1 189 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 CT45A9P0DMV2 189 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 EVI2BP34910 448 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 KRT20P35900 424 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 PDLIM4P50479 330 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 GPX6P59796 221 aa12.87□□□□□ -0.35
CLN3-249ENST00000636685 MRPS35P82673 323 aaKnown RBP12.87□□□□□ -0.35
CLN3-249ENST00000636685 CT45A2Q5DJT8 189 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms