RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 BTLAQ7Z6A9 289 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 CNEP1R1Q8N9A8 125 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 OR2M3Q8NG83 312 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 PIGTQ969N2 578 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 ARSGQ96EG1 525 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 PGM2Q96G03 612 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 TMEM237Q96Q45 408 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 SHCBP1LQ9BZQ2 653 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 DSN1Q9H410 356 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 ZNF395Q9H8N7 513 aaPredicted RBP19.02■□□□□ 0.64
VPS53-216ENST00000574029 SIRT5Q9NXA8 310 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 KLHL28Q9NXS3 571 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 ZNF226Q9NYT6 803 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 TMEM216Q9P0N5 145 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 PPP4R1LQ9P1A2 415 aa19.02■□□□□ 0.64
VPS53-216ENST00000574029 FADS1O60427 444 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 DLX3O60479 287 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 HEXAP06865 529 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 SNRPAP09012 282 aaKnown RBP19.01■□□□□ 0.63
VPS53-216ENST00000574029 TAC1P20366 129 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 CRYGSP22914 178 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 HMOX2P30519 316 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 GSTM5P46439 218 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 ACSM2AQ08AH3 577 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 Q5PR19 223 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 ACSM2BQ68CK6 577 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 UBQLNLQ8IYU4 475 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 MEIOBQ8N635 442 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 FIG4Q92562 907 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 ELOVL5Q9NYP7 299 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 SENP1Q9P0U3 644 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 NFU1Q9UMS0 254 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 ABCG2Q9UNQ0 655 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 OR10H1Q9Y4A9 318 aa19.01■□□□□ 0.63
VPS53-216ENST00000574029 ABCA2Q9BZC7 2435 aa19■□□□□ 0.63
VPS53-216ENST00000574029 FAM171A2A8MVW0 826 aa19■□□□□ 0.63
VPS53-216ENST00000574029 MYO1GB0I1T2 1018 aa19■□□□□ 0.63
VPS53-216ENST00000574029 SCO2O43819 266 aa19■□□□□ 0.63
VPS53-216ENST00000574029 SMPD2O60906 423 aa19■□□□□ 0.63
VPS53-216ENST00000574029 COQ9O75208 318 aa19■□□□□ 0.63
VPS53-216ENST00000574029 TNFRSF21O75509 655 aa19■□□□□ 0.63
VPS53-216ENST00000574029 CGAP01215 116 aa19■□□□□ 0.63
VPS53-216ENST00000574029 HK1P19367 917 aa19■□□□□ 0.63
VPS53-216ENST00000574029 IMPDH1P20839 514 aa19■□□□□ 0.63
VPS53-216ENST00000574029 UGT2B10P36537 528 aa19■□□□□ 0.63
VPS53-216ENST00000574029 SUCLG1P53597 346 aaKnown RBP19■□□□□ 0.63
VPS53-216ENST00000574029 EEFSECP57772 596 aaKnown RBP19■□□□□ 0.63
VPS53-216ENST00000574029 CYP27C1Q4G0S4 372 aa19■□□□□ 0.63
VPS53-216ENST00000574029 TIFABQ6ZNK6 161 aa19■□□□□ 0.63
VPS53-216ENST00000574029 P3H2Q8IVL5 708 aa19■□□□□ 0.63
VPS53-216ENST00000574029 LRRN4CLQ8ND94 238 aa19■□□□□ 0.63
VPS53-216ENST00000574029 UHMK1Q8TAS1 419 aaKnown RBP19■□□□□ 0.63
VPS53-216ENST00000574029 FAM111AQ96PZ2 611 aa19■□□□□ 0.63
VPS53-216ENST00000574029 EBPLQ9BY08 206 aa19■□□□□ 0.63
VPS53-216ENST00000574029 OPN3Q9H1Y3 402 aaPredicted RBP19■□□□□ 0.63
VPS53-216ENST00000574029 SDHAF3Q9NRP4 125 aa19■□□□□ 0.63
VPS53-216ENST00000574029 STK38LQ9Y2H1 464 aa19■□□□□ 0.63
VPS53-216ENST00000574029 ZNF337Q9Y3M9 751 aa19■□□□□ 0.63
VPS53-216ENST00000574029 RAI1Q7Z5J4 1906 aaPredicted RBP19■□□□□ 0.63
VPS53-216ENST00000574029 A0A087WUV0 522 aaPredicted RBP18.99■□□□□ 0.63
VPS53-216ENST00000574029 A0A087WV62 115 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 SERTM1A2A2V5 107 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 LINC01387J3KSC0 135 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 EMC8O43402 210 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 DDCP20711 480 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 CCKARP32238 428 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 ZNF155Q12901 538 aaPredicted RBP18.99■□□□□ 0.63
VPS53-216ENST00000574029 GANABQ14697 944 aaKnown RBP18.99■□□□□ 0.63
VPS53-216ENST00000574029 ACKR1Q16570 336 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 PRSS53Q2L4Q9 553 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 RAET1LQ5VY80 246 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 LCA5Q86VQ0 697 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 EIF1ADQ8N9N8 165 aaKnown RBP18.99■□□□□ 0.63
VPS53-216ENST00000574029 PIK3IP1Q96FE7 263 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 COX4I2Q96KJ9 171 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 MARK4Q96L34 752 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 BBS4Q96RK4 519 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 SLC39A3Q9BRY0 314 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 MED18Q9BUE0 208 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 RTN4RQ9BZR6 473 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 RNF122Q9H9V4 155 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 FLRT3Q9NZU0 649 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 MED11Q9P086 117 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 ZNF175Q9Y473 711 aa18.99■□□□□ 0.63
VPS53-216ENST00000574029 PCNX3Q9H6A9 2034 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 ESPNB1AK53 854 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 H0YC42 278 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 SLITRK5O94991 958 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 ENO1P06733 434 aaKnown RBP18.98■□□□□ 0.63
VPS53-216ENST00000574029 ANXA4P09525 319 aaPredicted RBP18.98■□□□□ 0.63
VPS53-216ENST00000574029 CD8BP10966 210 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 POU2F1P14859 743 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 FPR1P21462 350 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 ATP5F1P24539 256 aaPredicted RBP18.98■□□□□ 0.63
VPS53-216ENST00000574029 TPD52P55327 224 aaPredicted RBP18.98■□□□□ 0.63
VPS53-216ENST00000574029 PKNOX1P55347 436 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 SIRPAP78324 504 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 LCP2Q13094 533 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 LGSNQ5TDP6 509 aa18.98■□□□□ 0.63
VPS53-216ENST00000574029 PRSS57Q6UWY2 283 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms