RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HMBOX1Q6NT76 420 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 ZDHHC21Q8IVQ6 265 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 ZNF619Q8N2I2 560 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 ZSCAN1Q8NBB4 408 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 ZNF223Q9UK11 482 aaPredicted RBP28.3■■■□□ 2.12
CTCF-203ENST00000566078 BAG5Q9UL15 447 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 AHCTF1Q8WYP5 2266 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 FRG2CA6NGY1 282 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 CDRT15L2A8MXV6 281 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 C21orf140B9A014 251 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 KIAA0513O60268 411 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 TNFRSF1BP20333 461 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 CD82P27701 267 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 PIGAP37287 484 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 DCAF7P61962 342 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 TMEM102Q8N9M5 508 aaPredicted RBP28.29■■■□□ 2.12
CTCF-203ENST00000566078 GPR32P1Q8NGA4 272 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 RSPO3Q9BXY4 272 aaPredicted RBP28.29■■■□□ 2.12
CTCF-203ENST00000566078 ZNF700Q9H0M5 742 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 SEMA6AQ9H2E6 1030 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 MTHFD2LQ9H903 347 aaPredicted RBP28.29■■■□□ 2.12
CTCF-203ENST00000566078 POLE3Q9NRF9 147 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 AGPAT4Q9NRZ5 378 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 IGHV1-45A0A0A0MS14 117 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 IGKV1D-16P01601 117 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 FABP3P05413 133 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 PABPC4LP0CB38 370 aaKnown RBP28.29■■■□□ 2.12
CTCF-203ENST00000566078 COX6A1P12074 109 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 DRD5P21918 477 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 MAGEA2P43356 314 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 KCNJ5P48544 419 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 HSDL2Q6YN16 418 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 AMIGO2Q86SJ2 522 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 BCORP1Q8N888 145 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 GEMIN6Q8WXD5 167 aaKnown RBP28.29■■■□□ 2.12
CTCF-203ENST00000566078 ZG16BQ96DA0 208 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 NRSN2Q9GZP1 204 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 SAP130Q9H0E3 1048 aa28.29■■■□□ 2.12
CTCF-203ENST00000566078 CACYBPQ9HB71 228 aaKnown RBP28.29■■■□□ 2.12
CTCF-203ENST00000566078 TRBV11-1A0A0K0K1C0 115 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 hCG_2039718K7EN88 272 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 FESP07332 822 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 ATP6V1C1P21283 382 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 OTX2P32243 289 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 RNF4P78317 190 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 VLDLRP98155 873 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 TRIP10Q15642 601 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 ZNF311Q5JNZ3 666 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 ZAR1Q86SH2 424 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 OR52P1PQ8NH57 321 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 PROX1Q92786 737 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 GPR87Q9BY21 358 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 TRIM45Q9H8W5 580 aaPredicted RBP28.28■■■□□ 2.12
CTCF-203ENST00000566078 IL1RAPQ9NPH3 570 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 ASCL3Q9NQ33 180 aa28.28■■■□□ 2.12
CTCF-203ENST00000566078 NPIPA5A0A0B4J1W7 369 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 LOC101059948A0A1B0GTJ6 334 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 DCDC2BA2VCK2 349 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 NPIPA7E9PJI5 369 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 SOCS6O14544 535 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 TERTO14746 1132 aaKnown RBP28.27■■■□□ 2.12
CTCF-203ENST00000566078 NPIPA8P0DM63 369 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 PTDSS1P48651 473 aaKnown RBP28.27■■■□□ 2.12
CTCF-203ENST00000566078 ATP6AP1Q15904 470 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 FLYWCH1Q4VC44 716 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 VRK2Q86Y07 508 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 PEX5LQ8IYB4 626 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 NRG4Q8WWG1 115 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 LMF1Q96S06 567 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 G6PC3Q9BUM1 346 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 SH3GLB1Q9Y371 365 aa28.27■■■□□ 2.12
CTCF-203ENST00000566078 F8A1P23610 371 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 OR1E2P47887 323 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 NR0B1P51843 470 aaKnown RBP28.26■■■□□ 2.11
CTCF-203ENST00000566078 DECR1Q16698 335 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 IGF2-ASQ6U949 168 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 KIRREL2Q6UWL6 708 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 PPP1R32Q7Z5V6 425 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 ZNF441Q8N8Z8 693 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 ZNF354BQ96LW1 612 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 PINK1Q9BXM7 581 aa28.26■■■□□ 2.11
CTCF-203ENST00000566078 CDC14CA4D256 554 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 IQCJ-SCHIP1C9J366 451 aaPredicted RBP28.25■■■□□ 2.11
CTCF-203ENST00000566078 LDLRP01130 860 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 GUSBP08236 651 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 SSPNQ14714 243 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 OR11G2Q8NGC1 345 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 C7orf34Q96L11 122 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 ABCG2Q9UNQ0 655 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 ZNF443Q9Y2A4 671 aaPredicted RBP28.25■■■□□ 2.11
CTCF-203ENST00000566078 IFT52Q9Y366 437 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 CENPVL1A0A0U1RR11 272 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 AGAP5A6NIR3 686 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 PEX12O00623 359 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 CLOCKO15516 846 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 CST1P01037 141 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 RPS4Y1P22090 263 aaKnown RBP28.25■■■□□ 2.11
CTCF-203ENST00000566078 BTBD16Q32M84 506 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 LPCAT4Q643R3 524 aa28.25■■■□□ 2.11
CTCF-203ENST00000566078 C17orf47Q8NEP4 570 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms