RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PNLDC1Q8NA58 520 aaKnown RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 NFAM1Q8NET5 270 aaPredicted RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 TTLQ8NG68 377 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 OR2L5Q8NG80 312 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 OR52B6Q8NGF0 335 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 RHEBL1Q8TAI7 183 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 M1APQ8TC57 530 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 GRHL3Q8TE85 626 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 ZNF473Q8WTR7 871 aaKnown RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 UBTD2Q8WUN7 234 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 UBLCP1Q8WVY7 318 aaPredicted RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 HAS2Q92819 552 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 ATP6V1E2Q96A05 226 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 PPWD1Q96BP3 646 aaKnown RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 C5orf34Q96MH7 638 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 SIGLEC12Q96PQ1 595 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 OR1F2PQ96R84 312 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 SERINC2Q96SA4 455 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 CSF3RQ99062 836 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 TUBB6Q9BUF5 446 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 EFCAB11Q9BUY7 163 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 MS4A8Q9BY19 250 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 HES7Q9BYE0 225 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 EHD1Q9H4M9 534 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 ACTR8Q9H981 624 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 ZBTB26Q9HCK0 441 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 SEMA4BQ9NPR2 832 aaPredicted RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 KLHL1Q9NR64 748 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 PRTFDC1Q9NRG1 225 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 FARSBQ9NSD9 589 aaKnown RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 TMEM216Q9P0N5 145 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 FBXW2Q9UKT8 454 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 VPS4AQ9UN37 437 aa4.21□□□□□ -1.74
NUP54-206ENST00000508465 FLNBO75369 2602 aaKnown RBP4.21□□□□□ -1.74
NUP54-206ENST00000508465 TRBV11-1A0A0K0K1C0 115 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 A0A1W2PQ72 361 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 DYTNA2CJ06 578 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CYSRT1A8MQ03 144 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 A8MT66 165 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 PLPP1O14494 284 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 KLK8O60259 260 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 KLHL41O60662 606 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CTNSO60931 367 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 LDB3O75112 727 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CLDN9O95484 217 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CBX6O95503 412 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 KLK1P06870 262 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 ABHD2P08910 425 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 FAM58BPP0C7Q3 252 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CHN1P15882 459 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 IL10P22301 178 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 HIST1H1TP22492 207 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 CNTFP26441 200 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 MST1P26927 711 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 HSD17B3P37058 310 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 SSR2P43308 183 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TNFSF10P50591 281 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CCNG1P51959 295 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 RAP1GDS1P52306 607 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 MTTPP55157 894 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 RAB38P57729 211 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 KCNK10P57789 538 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 SKP1P63208 163 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 HOXA4Q00056 320 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 PMP22Q01453 160 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 OC90Q02509 493 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 TGM3Q08188 693 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 EXT1Q16394 746 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 ZNF750Q32MQ0 723 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 ADPRMQ3LIE5 342 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TMEM35AQ53FP2 167 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 UNC50Q53HI1 259 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TCHHL1Q5QJ38 904 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 LGSNQ5TDP6 509 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 KHDRBS2Q5VWX1 349 aaKnown RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 LIPJQ5W064 366 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 C18orf63Q68DL7 685 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TTC19Q6DKK2 380 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 GRHL2Q6ISB3 625 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 H3F3CQ6NXT2 135 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TRIM40Q6P9F5 258 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TIFABQ6ZNK6 161 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 DGAT2L6Q6ZPD8 337 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CCDC91Q7Z6B0 441 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 GPR180Q86V85 440 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 RPS19BP1Q86WX3 136 aaKnown RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 IQCKQ8N0W5 287 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 MMP21Q8N119 569 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 CCNYL1Q8N7R7 359 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 L3MBTL4Q8NA19 623 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 OR4F6Q8NGB9 312 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TRPC4APQ8TEL6 797 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 PTPMT1Q8WUK0 201 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 TM9SF4Q92544 642 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 RAB24Q969Q5 203 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 UBE2E3Q969T4 207 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 ANKRD9Q96BM1 317 aaPredicted RBP4.2□□□□□ -1.74
NUP54-206ENST00000508465 CMTM7Q96FZ5 175 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 ZNF354BQ96LW1 612 aa4.2□□□□□ -1.74
NUP54-206ENST00000508465 TAAR6Q96RI8 345 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms