RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CHAC2Q8WUX2 184 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 PRRC1Q96M27 445 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 MCHR1Q99705 422 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 RBCK1Q9BYM8 510 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 DPH1Q9BZG8 443 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 PLA2G2FQ9BZM2 168 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 PELI2Q9HAT8 420 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 PRDM7Q9NQW5 492 aa19.97■□□□□ 0.79
TRIM28-201ENST00000253024 ALPPP05187 535 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 PEBP1P30086 187 aaKnown RBP19.96■□□□□ 0.79
TRIM28-201ENST00000253024 GJA4P35212 333 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 MTFR2Q6P444 385 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 PLBD1Q6P4A8 553 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 ABHD17CQ6PCB6 329 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 ASB18Q6ZVZ8 466 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 CPOQ8IVL8 374 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 CYB561A3Q8NBI2 242 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 ADAMTS15Q8TE58 950 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 SPRYD4Q8WW59 207 aaPredicted RBP19.96■□□□□ 0.79
TRIM28-201ENST00000253024 POLDIP3Q9BY77 421 aaKnown RBP19.96■□□□□ 0.79
TRIM28-201ENST00000253024 OR51V1Q9H2C8 321 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 TRIM45Q9H8W5 580 aaPredicted RBP19.96■□□□□ 0.79
TRIM28-201ENST00000253024 IL23AQ9NPF7 189 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 STARD5Q9NSY2 213 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 NLKQ9UBE8 527 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 SLC7A7Q9UM01 511 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 STON1Q9Y6Q2 735 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 KIAA1549LQ6ZVL6 1849 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 A0A1W2PQU0 124 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 ZNF888P0CJ79 500 aaPredicted RBP19.96■□□□□ 0.79
TRIM28-201ENST00000253024 SNRPD2P62316 118 aaKnown RBP19.96■□□□□ 0.79
TRIM28-201ENST00000253024 CNIH2Q6PI25 160 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 ASB16Q96NS5 453 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 GIMAP4Q9NUV9 329 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 SLC27A6Q9Y2P4 619 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 ASB4Q9Y574 426 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 CNTRLQ7Z7A1 2325 aa19.96■□□□□ 0.79
TRIM28-201ENST00000253024 CCDC182A6NF36 153 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 THY1P04216 161 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 PIPP12273 146 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 TFF2Q03403 129 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 GPR50Q13585 617 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FIGNL1Q6PIW4 674 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 PRSS41Q7RTY9 318 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 OR7G2Q8NG99 324 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 TSACCQ96A04 125 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 TMCO6Q96DC7 493 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 DEPDC7Q96QD5 511 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 NDEL1Q9GZM8 345 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 A3GALT2U3KPV4 340 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 ARHGEF17Q96PE2 2063 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 POM121BA6NF01 834 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FAM25AB3EWG3 89 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FAM25CB3EWG5 89 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FAM25GB3EWG6 89 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 SLC30A4O14863 429 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 UBXN7O94888 489 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 CLUP10909 449 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 CSNK2A2P19784 350 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 HTRA4P83105 476 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 MEDAGQ5VYS4 303 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FAM26EQ8N5C1 309 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FLCNQ8NFG4 579 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 OR2L3Q8NG85 312 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 ENKURQ8TC29 256 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 UFD1Q92890 307 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 RNF31Q96EP0 1072 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 SLC35A4Q96G79 324 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 WACQ9BTA9 647 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 DIMT1Q9UNQ2 313 aaKnown RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 A0A0B4J293 547 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 LOC102723532A0A0G2JNH3 316 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 A8MVJ9 347 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 PRKNO60260 465 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 PVRP15151 417 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 KIR2DL3P43628 341 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 SCN1BQ07699 218 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 TMEM52BQ4KMG9 183 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 TRMT12Q53H54 448 aaKnown RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF544Q6NX49 715 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 SYT9Q86SS6 491 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 OR51L1Q8NGJ5 315 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 PFN4Q8NHR9 129 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 PATE1Q8WXA2 126 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FUZQ9BT04 418 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 HCAR1Q9BXC0 346 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 FGF22Q9HCT0 170 aa19.95■□□□□ 0.78
TRIM28-201ENST00000253024 TESQ9UGI8 421 aaKnown RBP19.95■□□□□ 0.78
TRIM28-201ENST00000253024 SERPINI2O75830 405 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 CA3P07451 260 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 SMIM11AP58511 58 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 DDI2Q5TDH0 399 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 C1orf94Q6P1W5 598 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 RPTNQ6XPR3 784 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 SLC36A4Q6YBV0 504 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 MTSS1LQ765P7 747 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 TMEM163Q8TC26 289 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 GRHL3Q8TE85 626 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 ST6GAL2Q96JF0 529 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 TMEM246Q9BRR3 403 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms