RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 IRF9Q00978 393 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 IRF8Q02556 426 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 E2F2Q14209 437 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 SFRP5Q5T4F7 317 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 LAS2Q8IYD9 372 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 GABRG1Q8N1C3 465 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 FADS6Q8N9I5 356 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 RNF138Q8WVD3 245 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 SLC35A4Q96G79 324 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 RADILQ96JH8 1075 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 TMEM79Q9BSE2 394 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 LRRC1Q9BTT6 524 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 BHLHE41Q9C0J9 482 aaPredicted RBP16.06■□□□□ 0.16
CLK3-227ENST00000570296 REXO2Q9Y3B8 237 aaKnown RBP16.06■□□□□ 0.16
CLK3-227ENST00000570296 AP4B1Q9Y6B7 739 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 PCNX3Q9H6A9 2034 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 PCNAP12004 261 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 EPB42P16452 691 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 NT5EP21589 574 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 DRD5P21918 477 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 NR4A2P43354 598 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 GAS1P54826 345 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 CHIT1Q13231 466 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 EFR3AQ14156 821 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 CRYMQ14894 314 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 TSNQ15631 228 aaKnown RBP16.05■□□□□ 0.16
CLK3-227ENST00000570296 PPP4R4Q6NUP7 873 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 MED27Q6P2C8 311 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 ADCY4Q8NFM4 1077 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 SIGLEC10Q96LC7 697 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 HBEGFQ99075 208 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 OCEL1Q9H607 264 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 FOLH1BQ9HBA9 442 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 ZBTB26Q9HCK0 441 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 FBXO34Q9NWN3 711 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 CTNNAL1Q9UBT7 734 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 ASIC3Q9UHC3 531 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 ZKSCAN5Q9Y2L8 839 aa16.05■□□□□ 0.16
CLK3-227ENST00000570296 A0A0A6YYD5 115 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 NCF1BA6NI72 391 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 NCF1CA8MVU1 366 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 TAPBPO15533 448 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 TMPRSS11DO60235 418 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 REM1O75628 298 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 STK16O75716 305 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 TUBBP07437 444 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 FAM58BPP0C7Q3 252 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 NCF1P14598 390 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 PPICP45877 212 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 SLMAPQ14BN4 828 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 TGFBIQ15582 683 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 TSC22D1Q15714 1073 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 MIDNQ504T8 468 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 CCDC25Q86WR0 208 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 FBXL14Q8N1E6 418 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 MUC15Q8N387 334 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 LRRC17Q8N6Y2 441 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 OR7G3Q8NG95 312 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 FAM216AQ8WUB2 273 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 KISS1RQ969F8 398 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 TMBIM1Q969X1 311 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 DHRS9Q9BPW9 319 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 PIMREGQ9BSJ6 248 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 ZNF717Q9BY31 904 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 C12orf49Q9H741 205 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 PAQR5Q9NXK6 330 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 BCAP29Q9UHQ4 241 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 TMEFF2Q9UIK5 374 aaPredicted RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 METRNQ9UJH8 293 aa16.04■□□□□ 0.16
CLK3-227ENST00000570296 MCTS1Q9ULC4 181 aaKnown RBP16.04■□□□□ 0.16
CLK3-227ENST00000570296 GOLGA8MH3BSY2 632 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 ABCD4O14678 606 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 TMPRSS2O15393 492 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 CPMP14384 443 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 PGAM1P18669 254 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 AGTR1P30556 359 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 EIF1AXP47813 144 aaKnown RBP16.03■□□□□ 0.16
CLK3-227ENST00000570296 KCNJ1P48048 391 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 PDLIM4P50479 330 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 GLYR1Q49A26 553 aaPredicted RBP16.03■□□□□ 0.16
CLK3-227ENST00000570296 CYP20A1Q6UW02 462 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 SSX8Q7RTT4 187 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 GGNQ86UU5 652 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 OR2M3Q8NG83 312 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 OR4K14Q8NGD5 310 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 DDX47Q9H0S4 455 aaKnown RBP16.03■□□□□ 0.16
CLK3-227ENST00000570296 DSN1Q9H410 356 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 DDX31Q9H8H2 851 aaKnown RBP16.03■□□□□ 0.16
CLK3-227ENST00000570296 PPP4R1LQ9P1A2 415 aa16.03■□□□□ 0.16
CLK3-227ENST00000570296 ARFGEF3Q5TH69 2177 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 IGHV4-61A0A0C4DH41 118 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 GOLGA8QA0A0J9YX86 632 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 GOLGA8OA6NCC3 632 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 GOLGA8NF8WBI6 632 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 GOLGA8RI6L899 631 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 PGRMC2O15173 223 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 EEDO75530 441 aaKnown RBP16.02■□□□□ 0.16
CLK3-227ENST00000570296 BMP4P12644 408 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 EPORP19235 508 aa16.02■□□□□ 0.16
CLK3-227ENST00000570296 HSPA7P48741 367 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms