RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 G3V2L1 256 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 SGK494L7N484 410 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 MAPK13O15264 365 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 CFLARO15519 480 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 STK17BO94768 372 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 NDUFA7O95182 113 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 GSTA1P08263 222 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 EPB41P11171 864 aaKnown RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 SELEP16581 610 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 DPP4P27487 766 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 MAT2AP31153 395 aaKnown RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 FCGR2CP31995 323 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 MAGEA9P43362 315 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 SGSHP51688 502 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 CRYBA2P53672 197 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 PEX3P56589 373 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 ERVK-16P61578 105 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 NAAAQ02083 359 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 NFATC2Q13469 925 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 ZKSCAN8Q15776 578 aaPredicted RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 HAGHQ16775 308 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 MTHFSDQ2M296 383 aaKnown RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 ACSF3Q4G176 576 aaPredicted RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 TCHHL1Q5QJ38 904 aaPredicted RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 C3P1Q6ZMU1 363 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 C18orf65Q6ZTR6 163 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 RPAINQ86UA6 219 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 GCNT2Q8N0V5 402 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 PYROXD2Q8N2H3 581 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 FADS6Q8N9I5 356 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 CHDHQ8NE62 594 aaPredicted RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 FBXO25Q8TCJ0 367 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 PNPLA2Q96AD5 504 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 PINX1Q96BK5 328 aaKnown RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 CAPNS2Q96L46 248 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 PLEKHF1Q96S99 279 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 TXN2Q99757 166 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 ERP44Q9BS26 406 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 IL1RAPQ9NPH3 570 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 FARSBQ9NSD9 589 aaKnown RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 TMEM181Q9P2C4 612 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 TUBGCP4Q9UGJ1 667 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 LCMT1Q9UIC8 334 aa6.25□□□□□ -1.41
LSM1-202ENST00000520286 RRP15Q9Y3B9 282 aaKnown RBP6.25□□□□□ -1.41
LSM1-202ENST00000520286 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.24□□□□□ -1.41
LSM1-202ENST00000520286 IGHV3-20A0A0C4DH32 117 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 IFITM10A6NMD0 228 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 NXPH4O95158 308 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 THRBP10828 461 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 TRIM23P36406 574 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 PTGFRP43088 359 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 NDST2P52849 883 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 RPS27AP62979 156 aaKnown RBP6.24□□□□□ -1.41
LSM1-202ENST00000520286 HERVK_113P63132 956 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 ERVK-8P63133 956 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 MAP2K1Q02750 393 aaPredicted RBP6.24□□□□□ -1.41
LSM1-202ENST00000520286 ZNF177Q13360 481 aaPredicted RBP6.24□□□□□ -1.41
LSM1-202ENST00000520286 ZSCAN26Q16670 478 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 SHROOM1Q2M3G4 852 aaPredicted RBP6.24□□□□□ -1.41
LSM1-202ENST00000520286 PARP6Q2NL67 630 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 ZNF699Q32M78 642 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 USH1GQ495M9 461 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 CASC1Q6TDU7 716 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 LCLAT1Q6UWP7 414 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 PAQR9Q6ZVX9 377 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 VPS36Q86VN1 386 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 ARFGAP2Q8N6H7 521 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 NUP37Q8NFH4 326 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 OR52B6Q8NGF0 335 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 FBXO30Q8TB52 745 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 FBXO17Q96EF6 278 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 SYT15Q9BQS2 421 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 CRACR2AQ9BSW2 395 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 ERVK-6Q9BXR3 956 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 WDR76Q9H967 626 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 FGF22Q9HCT0 170 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 MED4Q9NPJ6 270 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 STARD5Q9NSY2 213 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 GDAP2Q9NXN4 497 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 ATP6V1HQ9UI12 483 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 DUSP12Q9UNI6 340 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 WNK3Q9BYP7 1800 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 LY75O60449 1722 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 MEGF6O75095 1541 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 KDM6AO15550 1401 aaPredicted RBP6.24□□□□□ -1.41
LSM1-202ENST00000520286 PCDH11XQ9BZA7 1347 aa6.24□□□□□ -1.41
LSM1-202ENST00000520286 RNF222A6NCQ9 220 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 TRIM49BA6NDI0 452 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 ZNF724A8MTY0 619 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 H0YCG3 227 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 E2F3O00716 465 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 OR4F21O95013 312 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 PRG2P13727 222 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 CD1DP15813 335 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 RFC4P35249 363 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 ARFIP1P53367 373 aa6.23□□□□□ -1.41
LSM1-202ENST00000520286 KIAA0141Q14154 515 aaPredicted RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 TPD52L1Q16890 204 aaPredicted RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 KNOP1Q1ED39 458 aaKnown RBP6.23□□□□□ -1.41
LSM1-202ENST00000520286 DEFB115Q30KQ5 88 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms