RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 BHLHB9Q6PI77 547 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 IGFL3Q6UXB1 125 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 MDGA2Q7Z553 956 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ZAR1Q86SH2 424 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 TAGAPQ8N103 731 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 SLC34A3Q8N130 599 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 TMEM156Q8N614 296 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 RBMXL3Q8N7X1 1067 aaKnown RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 BCORP1Q8N888 145 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 OR5M3Q8NGP4 307 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 FBXO27Q8NI29 283 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 SLC22A8Q8TCC7 542 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ADAMTS15Q8TE58 950 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ASB15Q8WXK1 588 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 HAS2Q92819 552 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 EFHD2Q96C19 240 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 RMND5BQ96G75 393 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ANKRD27Q96NW4 1050 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 HES7Q9BYE0 225 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ADNPQ9H2P0 1102 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 PIGUQ9H490 435 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 TUBD1Q9UJT1 453 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 CBLCQ9ULV8 474 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 OR10H1Q9Y4A9 318 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 TLN1Q9Y490 2541 aaKnown RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 CFAP46Q8IYW2 2715 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 OR5H15A6NDH6 313 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 A8MVJ9 347 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 TSPAN2O60636 221 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 PPM1BO75688 479 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 NEURL1O76050 574 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 KCNK2O95069 426 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 NUDT7P0C024 238 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 PIGAP37287 484 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 KHKP50053 298 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 MTPNP58546 118 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 ARG2P78540 354 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 MRPS22P82650 360 aaKnown RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 OC90Q02509 493 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 RGNQ15493 299 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 OR1C1Q15619 314 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 LACTB2Q53H82 288 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 RABL3Q5HYI8 236 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 NANOGP8Q6NSW7 305 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 FIGNL1Q6PIW4 674 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 ASB18Q6ZVZ8 466 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 CYP4Z2PQ8N1L4 340 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 SLC15A4Q8N697 577 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 COX18Q8N8Q8 333 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 LSM14AQ8ND56 463 aaKnown RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 MDS2Q8NDY4 140 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 OR10G3Q8NGC4 313 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 OR52N2Q8NGI0 321 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 LRRC58Q96CX6 371 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 CMTM5Q96DZ9 223 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 SPACA9Q96E40 222 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 STACQ99469 402 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 UTP23Q9BRU9 249 aaKnown RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 MFRPQ9BY79 579 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 RNF32Q9H0A6 362 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 TRIM45Q9H8W5 580 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-209ENST00000469852 NANOGQ9H9S0 305 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 Q9N2J8 555 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 DUSP22Q9NRW4 184 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 FLRT3Q9NZU0 649 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 LRFN1Q9P244 771 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 ABI3Q9P2A4 366 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 TAGLN3Q9UI15 199 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 ZNF451Q9Y4E5 1061 aa13.61□□□□□ -0.23
COL9A3-209ENST00000469852 TTC36A6NLP5 189 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 UGT2B11O75310 529 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 REM1O75628 298 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 KRT75O95678 551 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 T-ENOLP0DO92 83 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 CCL3P10147 92 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 CRATP43155 626 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 RFX3P48380 749 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 CYB561P49447 251 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 NUDT2P50583 147 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 TNFSF10P50591 281 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 NRG3P56975 720 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 POU6F2P78424 691 aaPredicted RBP13.6□□□□□ -0.23
COL9A3-209ENST00000469852 KRT72Q14CN4 511 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 MAPK11Q15759 364 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 NTRK2Q16620 822 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 CYP27C1Q4G0S4 372 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 DCST2Q5T1A1 773 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 BICRALQ6AI39 1079 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 OPN5Q6U736 354 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 TRPM8Q7Z2W7 1104 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 FAM13CQ8NE31 585 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 DNAJB8Q8NHS0 232 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 FAM110BQ8TC76 370 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 XAGE5Q8WWM1 108 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 HGDQ93099 445 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 NODALQ96S42 347 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 ADOQ96SZ5 270 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 BTBD2Q9BX70 525 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 SH2D2AQ9NP31 389 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms