RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ITGA10O75578 1167 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 UGT2B17O75795 530 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CD48P09326 243 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 LINC00032P0C843 101 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 HNRNPLP14866 589 aaKnown RBP eCLIP6.91□□□□□ -1.38e-7■■□□□ 12.1
SCN9A-202ENST00000409435 HSD11B1P28845 292 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 KIR2DL3P43628 341 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 KIR3DL1P43629 444 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SLC18A2Q05940 514 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RASGEF1BQ0VAM2 473 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM214Q6NUQ4 689 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SLC30A6Q6NXT4 461 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ZFAND4Q86XD8 727 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SPARTQ8N0X7 666 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SEMA6DQ8NFY4 1073 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF570Q96NI8 536 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RBP7Q96R05 134 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 AGAP2Q99490 1192 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 XYLT2Q9H1B5 865 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 THUMPD1Q9NXG2 353 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OR5K3A6NET4 321 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ANXA2P2A6NMY6 339 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 H7C1Q1 480 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 AP1G1O43747 822 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ALOX12BO75342 701 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SCGB1D2O95969 90 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ANXA2P07355 339 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ADH6P28332 368 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MADCAM1Q13477 382 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CRTC2Q53ET0 693 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 GCNT6Q5T4J0 391 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NDUFAF5Q5TEU4 345 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 VHLLQ6RSH7 139 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PAMR1Q6UXH9 720 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ADAMTSL4Q6UY14 1074 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 GCNT7Q6ZNI0 430 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SLC46A3Q7Z3Q1 461 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MRPL41Q8IXM3 137 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OR51D1Q8NGF3 324 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 TRMT10AQ8TBZ6 339 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 FNDC8Q8TC99 324 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 LRRC15Q8TF66 581 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RFKQ969G6 155 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 BMFQ96LC9 184 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 DPCDQ9BVM2 203 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RIMKLBQ9ULI2 386 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RAXQ9Y2V3 346 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NOP16Q9Y3C1 178 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 A0A1B0GTQ1 180 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 F5H0A9 414 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 KIAA0513O60268 411 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RDH16O75452 317 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 LCKP06239 509 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 LPLP06858 475 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PVRP15151 417 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 AGTR1P30556 359 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NOVP48745 357 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PPP3R1P63098 170 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 GALEQ14376 348 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SLC10A1Q14973 349 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF181Q2M3W8 571 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NKAIN1Q4KMZ8 207 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SFT2D3Q587I9 215 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ZCCHC23Q6ZST2 131 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OR9K2Q8NGE7 335 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OR14A16Q8NHC5 309 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MARK4Q96L34 752 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ADAD1Q96M93 576 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PACSIN3Q9UKS6 424 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OSGIN2Q9Y236 505 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SHOXO15266 292 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PTHP01270 115 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CHRM5P08912 532 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CSRP1P21291 193 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CD9P21926 228 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 DNASE1P24855 282 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 GABRB2P47870 512 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RAB7AP51149 207 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CRISP3P54108 245 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 TMBIM6P55061 237 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RAB4BP61018 213 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 FGL1Q08830 312 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SLAMF1Q13291 335 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MELKQ14680 651 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NKPD1Q17RQ9 610 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NADK2Q4G0N4 442 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ST7LQ8TDW4 575 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 HYLS1Q96M11 299 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MYOCOSA0A1B0GUC4 107 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 A0A1W2PRB8 838 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 FAM166BA8MTA8 275 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 M0R129 80 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 CCL21O00585 134 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF821O75541 412 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-202ENST00000409435 C8BP07358 591 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 HMGA1P17096 107 aaKnown RBP6.9□□□□□ -1.3
SCN9A-202ENST00000409435 BPIP17213 487 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 FECHP22830 423 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 MERTKQ12866 999 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 KHDC1LQ5JSQ8 128 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms