RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PTH2RP49190 550 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PLTPP55058 493 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 TRAF3Q13114 568 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 TECRLQ5HYJ1 363 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 VWA1Q6PCB0 445 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PLXDC2Q6UX71 529 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PPP1R14CQ8TAE6 165 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 RNF138Q8WVD3 245 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 TM4SF18Q96CE8 201 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PHF21BQ96EK2 531 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 ZNF681Q96N22 645 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 SHCBP1LQ9BZQ2 653 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 RAB17Q9H0T7 212 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 CXorf56Q9H5V9 222 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 FANCFQ9NPI8 374 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PFDN4Q9NQP4 134 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 SDHAF3Q9NRP4 125 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 PCTPQ9UKL6 214 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 UTS2RQ9UKP6 389 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 NFU1Q9UMS0 254 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 SNX6Q9UNH7 406 aa13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 RAI1Q7Z5J4 1906 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-201ENST00000301897 FBN1P35555 2871 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 TRIM64A6NGJ6 449 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 TRIM64BA6NI03 449 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 INAFM1C9JVW0 142 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 RAD51CO43502 376 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 CNOT4O95628 575 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 CT45A8P0DMV1 189 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 CT45A9P0DMV2 189 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 FCGR2AP12318 317 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 TBXA2RP21731 343 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 ALDH9A1P49189 494 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 B3GALT5-AS1P59052 145 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 GALNT1Q10472 559 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 LTB4RQ15722 352 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 CT45A2Q5DJT8 189 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 SGO1Q5FBB7 561 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 BEX5Q5H9J7 111 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 UBQLNLQ8IYU4 475 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 TMEM171Q8WVE6 324 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 SELENOMQ8WWX9 145 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 CNRIP1Q96F85 164 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 MARK4Q96L34 752 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 VSTM2LQ96N03 204 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 STMN4Q9H169 189 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 OPN3Q9H1Y3 402 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 PTGES2Q9H7Z7 377 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 GIMAP4Q9NUV9 329 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 TAS2R9Q9NYW1 312 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 PPP4R1LQ9P1A2 415 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 STOML1Q9UBI4 398 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 PROCRQ9UNN8 238 aa13.33□□□□□ -0.28
CCDC88B-201ENST00000301897 HMX2A2RU54 273 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 ESRRBO95718 433 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 CGAP01215 116 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 HSD3B1P14060 373 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 HSD3B2P26439 372 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 CCKARP32238 428 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 GAS1P54826 345 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 NR1H2P55055 460 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 RPS3AP61247 264 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 SIRPAP78324 504 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 MRPS35P82673 323 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 GUCY2DQ02846 1103 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 TSNAXIP1Q2TAA8 658 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF628Q5EBL2 1059 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 RAET1LQ5VY80 246 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 OR5M10Q6IEU7 315 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 FADS6Q8N9I5 356 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 SPATA4Q8NEY3 305 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 OR4F6Q8NGB9 312 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 FBXO25Q8TCJ0 367 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 GFM2Q969S9 779 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 PIGQQ9BRB3 760 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 REPIN1Q9BWE0 567 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 VPS11Q9H270 941 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 RNF122Q9H9V4 155 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 ZBTB26Q9HCK0 441 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 VPS29Q9UBQ0 182 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 ABCG2Q9UNQ0 655 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 OR10H1Q9Y4A9 318 aa13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 CHD3Q12873 2000 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-201ENST00000301897 UQCRHLA0A096LP55 91 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 PLOD3O60568 738 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 PDYNP01213 254 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 HK1P19367 917 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 EVI2BP34910 448 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 PHBP35232 272 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 CORO7P57737 925 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 DUSP2Q05923 314 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 UAP1Q16222 522 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 GLYR1Q49A26 553 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 FAM214BQ7L5A3 538 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 ZNF550Q7Z398 422 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 SLC44A2Q8IWA5 706 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 CCDC116Q8IYX3 515 aa13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 C1orf52Q8N6N3 182 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-201ENST00000301897 FIG4Q92562 907 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms