RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FNDC3BQ53EP0 1204 aaKnown RBP10.02□□□□□ -0.81
USP28-201ENST00000003302 STPG1Q5TH74 334 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 SYCE2Q6PIF2 218 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 HSDL2Q6YN16 418 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ASB18Q6ZVZ8 466 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 KLBQ86Z14 1044 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 OR4D9Q8NGE8 314 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 CCL4L1Q8NHW4 92 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 MSLNLQ96KJ4 702 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 MND1Q9BWT6 205 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 DDX31Q9H8H2 851 aaKnown RBP10.02□□□□□ -0.81
USP28-201ENST00000003302 SLC6A20Q9NP91 592 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 HINT3Q9NQE9 182 aaKnown RBP10.02□□□□□ -0.81
USP28-201ENST00000003302 GRIP1Q9Y3R0 1128 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 OR6C70A6NIJ9 312 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 NDUFS4O43181 175 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ENPP1P22413 925 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 SSR2P43308 183 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ZNF628Q5EBL2 1059 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 LYPD4Q6UWN0 246 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ADGRD2Q7Z7M1 963 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 C17orf64Q86WR6 236 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 NRMQ8IXM6 262 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ARIH2OSQ8N7S6 290 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 C17orf47Q8NEP4 570 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ANKK1Q8NFD2 765 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 WACQ9BTA9 647 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 FNDC11Q9BVV2 318 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ALG5Q9Y673 324 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 DOCK8Q8NF50 2099 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 CPEP16870 476 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 MYL9P24844 172 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 FRKP42685 505 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 MLLT11Q13015 90 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 NCF4Q15080 339 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 PFN4Q8NHR9 129 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 RELTQ969Z4 430 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 EFHD2Q96C19 240 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 MCUBQ9NWR8 336 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ZNF346Q9UL40 294 aaKnown RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 MAN2B1O00754 1011 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 REM1O75628 298 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 KRT75O95678 551 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 AIFM1O95831 613 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 POU3F3P20264 500 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 GSTM5P46439 218 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 THSD4Q6ZMP0 1018 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ZNF730Q6ZMV8 503 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 RAB43Q86YS6 212 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 FAM26EQ8N5C1 309 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 DNAJC5GQ8N7S2 189 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ASCC1Q8N9N2 400 aaKnown RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 CYB561A3Q8NBI2 242 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 OR51G2Q8NGK0 314 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 SPRYD4Q8WW59 207 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 BEX1Q9HBH7 125 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 APOBEC3BQ9UH17 382 aaKnown RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 TRAPPC4Q9Y296 219 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 A0A0A6YYD5 115 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 A0A1W2PRQ8 180 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 RFPL3O75679 317 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ALDH1A1P00352 501 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 PIPP12273 146 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 MTNR1AP48039 350 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 WNT4P56705 351 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 E2F1Q01094 437 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 OTPQ5XKR4 325 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 HIST2H2AA3Q6FI13 130 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ZAR1Q86SH2 424 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 AMZ2Q86W34 360 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 Q8N402 240 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 TMEM99Q8N816 258 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 OR51L1Q8NGJ5 315 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 POF1BQ8WVV4 589 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 CXorf40BQ96DE9 158 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 CITED4Q96RK1 184 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ATF6BQ99941 703 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 KCNE5Q9UJ90 142 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 SSR3Q9UNL2 185 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 MAU2Q9Y6X3 613 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 RP1P56715 2156 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 H0Y8X5 98 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 SCO2O43819 266 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 LGI1O95970 557 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 OMPP47874 163 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 GXYLT1Q4G148 440 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 FAM109BQ6ICB4 259 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 C1orf94Q6P1W5 598 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 SSX6Q7RTT6 188 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 TIGD4Q8IY51 512 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 ARL14Q8N4G2 192 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 OR5K2Q8NHB8 316 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 OR5P2Q8WZ92 322 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 WDR89Q96FK6 387 aaPredicted RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 SLC35G5Q96KT7 338 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 C3orf14Q9HBI5 128 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 SLC35C2Q9NQQ7 365 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 SEC14L4Q9UDX3 406 aa10.01□□□□□ -0.81
USP28-201ENST00000003302 DIMT1Q9UNQ2 313 aaKnown RBP10.01□□□□□ -0.81
USP28-201ENST00000003302 LTBP2Q14767 1821 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 704.3 ms