RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ICAM2P13598 275 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 ATP6V1B2P21281 511 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 PSMA4P25789 261 aaKnown RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 SLC7A1P30825 629 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 SSTR4P31391 388 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 PTGER1P34995 402 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 HPCAP84074 193 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 ZNF155Q12901 538 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 DUSP8Q13202 625 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 CAMK2BQ13554 666 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 EXOSC7Q15024 291 aaKnown RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 DUSP5Q16690 384 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 PAPD4Q6PIY7 484 aaKnown RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 SHISA6Q6ZSJ9 500 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 LANCL3Q6ZV70 420 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 SLC29A4Q7RTT9 530 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 SPPL2CQ8IUH8 684 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 PAPD5Q8NDF8 572 aaKnown RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 OR5D16Q8NGK9 328 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 OR5L2Q8NGL0 311 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 NFKBIDQ8NI38 313 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 NUBPLQ8TB37 319 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 SLC26A7Q8TE54 656 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 LZICQ8WZA0 190 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 SLC9A6Q92581 669 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 RAB8BQ92930 207 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 MAL2Q969L2 176 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 TMEM19Q96HH6 336 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 RSRC1Q96IZ7 334 aaKnown RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 TREX2Q9BQ50 279 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 WDR77Q9BQA1 342 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 G6PC3Q9BUM1 346 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 TMEM121BQ9BXQ6 578 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 OR8D2Q9GZM6 311 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 SAP130Q9H0E3 1048 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 YY1AP1Q9H869 796 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 EVA1AQ9H8M9 152 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 MTHFD2LQ9H903 347 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 CCM2LQ9NUG4 571 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 ARMC1Q9NVT9 282 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 GMPR2Q9P2T1 348 aaKnown RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 ANGPTL2Q9UKU9 493 aa14.19□□□□□ -0.14
SS18-215ENST00000580642 GPR55Q9Y2T6 319 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 NUP214P35658 2090 aaPredicted RBP14.19□□□□□ -0.14
SS18-215ENST00000580642 DSPPQ9NZW4 1301 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 TEX51A0A1B0GUA7 166 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 TCRBV5S2A0A599 114 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 DHRS12A0PJE2 317 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 FRG2CA6NGY1 282 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 A8MVJ9 347 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 TO15178 435 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 SLC28A2O43868 658 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 STX11O75558 287 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 BCHEP06276 602 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 CT45A8P0DMV1 189 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 CT45A9P0DMV2 189 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 ACP2P11117 423 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 LIPCP11150 499 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 NCK1P16333 377 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 GABRA3P34903 492 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 PSMD4P55036 377 aaKnown RBP14.18□□□□□ -0.14
SS18-215ENST00000580642 SLC26A5P58743 744 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 POU6F2P78424 691 aaPredicted RBP14.18□□□□□ -0.14
SS18-215ENST00000580642 PSG6Q00889 435 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 ZSWIM7Q19AV6 140 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 CT45A2Q5DJT8 189 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 CYP2R1Q6VVX0 501 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 CBLL1Q75N03 491 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 EIF3MQ7L2H7 374 aaKnown RBP14.18□□□□□ -0.14
SS18-215ENST00000580642 NDUFAF7Q7L592 441 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 COX18Q8N8Q8 333 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 M1APQ8TC57 530 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 FAM110BQ8TC76 370 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 GPR151Q8TDV0 419 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 NKD1Q969G9 470 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 KIAA1143Q96AT1 154 aaPredicted RBP14.18□□□□□ -0.14
SS18-215ENST00000580642 NXPE2Q96DL1 559 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 HSPBAP1Q96EW2 488 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 LCORQ96JN0 433 aaPredicted RBP14.18□□□□□ -0.14
SS18-215ENST00000580642 NUDT9Q9BW91 350 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 ZNF350Q9GZX5 532 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 ANKRA2Q9H9E1 313 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 ANAPC2Q9UJX6 822 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 USP22Q9UPT9 525 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 HS3ST3B1Q9Y662 390 aa14.18□□□□□ -0.14
SS18-215ENST00000580642 IGHV1-45A0A0A0MS14 117 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 C2orf92A0A1B0GVN3 265 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 HRKO00198 91 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 SERPINA1P01009 418 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 FCGR1AP12314 374 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 DLSTP36957 453 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 PIGAP37287 484 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 CASP9P55211 416 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 SELENOWP63302 87 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 PUM1Q14671 1186 aaKnown RBP eCLIP14.17□□□□□ -0.14
SS18-215ENST00000580642 EBPQ15125 230 aaKnown RBP14.17□□□□□ -0.14
SS18-215ENST00000580642 MAPK11Q15759 364 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 FAM98BQ52LJ0 330 aaKnown RBP14.17□□□□□ -0.14
SS18-215ENST00000580642 DCST2Q5T1A1 773 aa14.17□□□□□ -0.14
SS18-215ENST00000580642 HLA-DQA1Q5Y7H0 255 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms