RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ACSM5Q6NUN0 579 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 MTSS1LQ765P7 747 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 ASPGQ86U10 573 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 VRK2Q86Y07 508 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 CLIP4Q8N3C7 705 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 PROKR2Q8NFJ6 384 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 NT5CQ8TCD5 201 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 NR4A3Q92570 626 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 ZG16BQ96DA0 208 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 MND1Q9BWT6 205 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 ACTRT3Q9BYD9 372 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 EQTNQ9NQ60 294 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 QPCTLQ9NXS2 382 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 CALML5Q9NZT1 146 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 PCOLCE2Q9UKZ9 415 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 SCML1Q9UN30 329 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 CFL2Q9Y281 166 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 UGT2A1Q9Y4X1 527 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 PEX16Q9Y5Y5 336 aa9.46□□□□□ -0.9
VPS53-220ENST00000576149 RFXAPO00287 272 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 NARSO43776 548 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 CYP7B1O75881 506 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 ZNF888P0CJ79 500 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 ACADMP11310 421 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SOX6P35712 828 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 TAS2R41P59536 307 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 NFATC4Q14934 902 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 TCEA2Q15560 299 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 LTB4RQ15722 352 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 ZNF181Q2M3W8 571 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SYT14P1Q58G82 188 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 PPP2R2DQ66LE6 453 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 FBXO42Q6P3S6 717 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SLC22A16Q86VW1 577 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 KIF18BQ86Y91 864 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 LYSMD2Q8IV50 215 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 RBM12BQ8IXT5 1001 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 FLVCR1-AS1Q8TAF5 88 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 KAT2AQ92830 837 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SLC22A18Q96BI1 424 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SIPA1Q96FS4 1042 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 PRR14Q9BWN1 585 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 NKX2-4Q9H2Z4 354 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SRMSQ9H3Y6 488 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 NTMQ9P121 344 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 TESQ9UGI8 421 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 GPR55Q9Y2T6 319 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 CHST2Q9Y4C5 530 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 H0Y8X5 98 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SNRNP200O75643 2136 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 B3GALNT1O75752 331 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 ZIC2O95409 532 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 KLF8O95600 359 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 EGFP01133 1207 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 HBQ1P09105 142 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 ETV6P41212 452 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SOX3P41225 446 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 MLLT3P42568 568 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 SMSP52788 366 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SNRPNP63162 240 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 ATAD3BQ5T9A4 648 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 AGAP7PQ5VUJ5 663 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 GDPGP1Q6ZNW5 385 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 DGLUCYQ7Z3D6 616 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 C16orf62Q7Z3J2 963 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 RD3Q7Z3Z2 195 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 GJD3Q8N144 294 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 PARP16Q8N5Y8 322 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 TEX19Q8NA77 164 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 CCL4L1Q8NHW4 92 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 DIO2Q92813 273 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 MRPL38Q96DV4 380 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 TM4SF19Q96DZ7 209 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 LRR1Q96L50 414 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 BMFQ96LC9 184 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 WDR92Q96MX6 357 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 ZNF582Q96NG8 517 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 TWSG1Q9GZX9 223 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 C6orf106Q9H6K1 298 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 POLMQ9NP87 494 aaPredicted RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 POLE4Q9NR33 117 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 ABCB10Q9NRK6 738 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SEMA4GQ9NTN9 838 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 SLC13A4Q9UKG4 626 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 DIMT1Q9UNQ2 313 aaKnown RBP9.45□□□□□ -0.9
VPS53-220ENST00000576149 CA5BQ9Y2D0 317 aa9.45□□□□□ -0.9
VPS53-220ENST00000576149 DUXAA6NLW8 204 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TBX1O43435 398 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 FRS3O43559 492 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 APBB3O95704 486 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SLC35G6P0C7Q6 338 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SMIM10L1P0DMW3 83 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 BTF3P20290 206 aaKnown RBP9.44□□□□□ -0.9
VPS53-220ENST00000576149 PRKAR1BP31321 381 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 IFNGR2P38484 337 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TNFRSF17Q02223 184 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 TRAM2Q15035 370 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 SNAPC1Q16533 368 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 C6orf132Q5T0Z8 1188 aa9.44□□□□□ -0.9
VPS53-220ENST00000576149 HEPHL1Q6MZM0 1159 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms