RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	ZNF175	Q9Y473	711 aa		10.51	□□□□□ -0.73
CLK3-222	ENST00000568232	EXPH5	Q8NEV8	1989 aa		10.51	□□□□□ -0.73
CLK3-222	ENST00000568232	PRR14L	Q5THK1	2151 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	LOC100289279	A0A1B0GTE1	492 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	ST8SIA5	O15466	376 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	TCF21	O43680	179 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	KRT14	P02533	472 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	NR2F6	P10588	404 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	RAP1GDS1	P52306	607 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	C21orf58	P58505	322 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	IRF8	Q02556	426 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	BSPH1	Q075Z2	132 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	LAPTM5	Q13571	262 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	DDX39B	Q13838	428 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	SQLE	Q14534	574 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	EXOSC7	Q15024	291 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	TGFBI	Q15582	683 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	NRF1	Q16656	503 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	PAGE2B	Q5JRK9	111 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	TEDDM1	Q5T9Z0	273 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	MRM1	Q6IN84	353 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	FAM166A	Q6J272	317 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	CNTN4	Q8IWV2	1026 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	ZCCHC7	Q8N3Z6	543 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	OR6K3	Q8NGY3	331 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	RGMA	Q96B86	450 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	LCOR	Q96JN0	433 aa	Predicted RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	CACNG6	Q9BXT2	260 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	ZNF717	Q9BY31	904 aa	Predicted RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	CISD1	Q9NZ45	108 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	WHRN	Q9P202	907 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	GPR52	Q9Y2T5	361 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	EMC9	Q9Y3B6	208 aa		10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	YLPM1	P49750	1951 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-222	ENST00000568232	DPRX	A6NFQ7	191 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232		H3BML4	177 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	KIAA0513	O60268	411 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	STK16	O75716	305 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	NTN1	O95631	604 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	GBA	P04062	536 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	SLC25A16	P16260	332 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	PGAM1	P18669	254 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	NT5E	P21589	574 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	GRK2	P25098	689 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	GGT5	P36269	586 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	EEFSEC	P57772	596 aa	Known RBP	10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	DSCR9	P59020	149 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	GUCA2A	Q02747	115 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	TAB1	Q15750	504 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	PDK4	Q16654	411 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	RAET1L	Q5VY80	246 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	FAM111B	Q6SJ93	734 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	BEND4	Q6ZU67	534 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	ADAMTSL2	Q86TH1	951 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	DTX2	Q86UW9	622 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	GAS2L3	Q86XJ1	694 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	GPSM1	Q86YR5	675 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	LAS2	Q8IYD9	372 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	DEPDC4	Q8N2C3	294 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	SPATA6L	Q8N4H0	392 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	NKAP	Q8N5F7	415 aa	Known RBP	10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	ADCY4	Q8NFM4	1077 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	OR7G3	Q8NG95	312 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	OR7G1	Q8NGA0	311 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	FAM168A	Q92567	244 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	TMBIM1	Q969X1	311 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	MSI2	Q96DH6	328 aa	Known RBP	10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	PPAN	Q9NQ55	473 aa	Known RBP	10.49	□□□□□ -0.73
CLK3-222	ENST00000568232	BCAP29	Q9UHQ4	241 aa		10.49	□□□□□ -0.73
CLK3-222	ENST00000568232		A0A0A6YYD5	115 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	CCNT2	O60583	730 aa	Known RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	PLG	P00747	810 aa	Predicted RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	FGG	P02679	453 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	ALDOA	P04075	364 aa	Known RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	FAM58BP	P0C7Q3	252 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	HK1	P19367	917 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	PSMB1	P20618	241 aa	Known RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	IL11	P20809	199 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	HNF1A	P20823	631 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	USF1	P22415	310 aa	Predicted RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	PIK3R1	P27986	724 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	XK	P51811	444 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	GAS1	P54826	345 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	CTBP2	P56545	445 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	DSCR4	P56555	118 aa	Predicted RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	MGAT2	Q10469	447 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	SGCB	Q16585	318 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	MED27	Q6P2C8	311 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	SEZ6L2	Q6UXD5	910 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	GALNT7	Q86SF2	657 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	IGDCC3	Q8IVU1	814 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	RFLNB	Q8N5W9	214 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	PPM1N	Q8N819	430 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	OR4K17	Q8NGC6	315 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	SGMS2	Q8NHU3	365 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	C10orf105	Q8TEF2	133 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	ZNF775	Q96BV0	537 aa	Predicted RBP	10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	TMCO6	Q96DC7	493 aa		10.48	□□□□□ -0.73
CLK3-222	ENST00000568232	CERS2	Q96G23	380 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms