RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MAGEA12P43365 314 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 PSPHP78330 225 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 TRADDQ15628 312 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 ZNF628Q5EBL2 1059 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 TTC19Q6DKK2 380 aaPredicted RBP12.29□□□□□ -0.44
SS18-204ENST00000539244 GRAMD2AQ8IUY3 354 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 P3H2Q8IVL5 708 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 ADCY4Q8NFM4 1077 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 OR4F6Q8NGB9 312 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 RDH11Q8TC12 318 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 TMBIM1Q969X1 311 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 KLHL29Q96CT2 875 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 ERP27Q96DN0 273 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 STARD4Q96DR4 205 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 PHF21BQ96EK2 531 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 SFXN2Q96NB2 322 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 RAB17Q9H0T7 212 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 ELOVL6Q9H5J4 265 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 FBXL2Q9UKC9 423 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 SLC12A4Q9UP95 1085 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 RAI1Q7Z5J4 1906 aaPredicted RBP12.29□□□□□ -0.44
SS18-204ENST00000539244 JMJD1CQ15652 2540 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 B4DXG7 233 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 ZIC3O60481 467 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 SMPD2O60906 423 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 LY6G6DO95868 133 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 RPS17P08708 135 aaKnown RBP12.28□□□□□ -0.44
SS18-204ENST00000539244 CT45A8P0DMV1 189 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 CT45A9P0DMV2 189 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 CRYGSP22914 178 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 CPOXP36551 454 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 CD79BP40259 229 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 GAS1P54826 345 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 MRPS35P82673 323 aaKnown RBP12.28□□□□□ -0.44
SS18-204ENST00000539244 C2orf54Q08AI8 447 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 FAM27E3Q08E93 113 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 LTB4RQ15722 352 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 CT45A2Q5DJT8 189 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 OR2A2Q6IF42 318 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 MILR1Q7Z6M3 343 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 MARK4Q96L34 752 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 WFIKKN1Q96NZ8 548 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 FAIM2Q9BWQ8 316 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 C1QTNF3Q9BXJ4 246 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 FARSBQ9NSD9 589 aaKnown RBP12.28□□□□□ -0.44
SS18-204ENST00000539244 ZNF226Q9NYT6 803 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 C6orf203Q9P0P8 240 aaPredicted RBP12.28□□□□□ -0.44
SS18-204ENST00000539244 ZNF780BQ9Y6R6 833 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 DSCAMO60469 2012 aa12.28□□□□□ -0.44
SS18-204ENST00000539244 REM1O75628 298 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 OTCP00480 354 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 PDYNP01213 254 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 PEPDP12955 493 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 FPR1P21462 350 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 GRK2P25098 689 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 CCKARP32238 428 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 PNLIPRP2P54317 469 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 B3GALT5-AS1P59052 145 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 EFR3AQ14156 821 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 LETMD1Q6P1Q0 360 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 VWA1Q6PCB0 445 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 TAOK1Q7L7X3 1001 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 CIARTQ8N365 385 aaPredicted RBP12.27□□□□□ -0.45
SS18-204ENST00000539244 SELENOMQ8WWX9 145 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 MRRFQ96E11 262 aaKnown RBP12.27□□□□□ -0.45
SS18-204ENST00000539244 VSTM2LQ96N03 204 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 ADOQ96SZ5 270 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 BDH2Q9BUT1 245 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 FUT8Q9BYC5 575 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 VPS11Q9H270 941 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 ACSS3Q9H6R3 686 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 NMRK1Q9NWW6 199 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 XPR1Q9UBH6 696 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 DKKL1Q9UK85 242 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 UTS2RQ9UKP6 389 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 SNX6Q9UNH7 406 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 CSPG4Q6UVK1 2322 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 TLN2Q9Y4G6 2542 aa12.27□□□□□ -0.45
SS18-204ENST00000539244 HIVEP2P31629 2446 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 SLC22A20A6NK97 555 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 H7C1Q1 480 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 SMIM24O75264 130 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 CGAP01215 116 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 COL6A2P12110 1019 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 HSD3B1P14060 373 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 HSD3B2P26439 372 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 DPP4P27487 766 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 LOXP28300 417 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 KIR2DL2P43627 348 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 DSCR4P56555 118 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 CORO7P57737 925 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 UAP1Q16222 522 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 ACKR1Q16570 336 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 TSNAXIP1Q2TAA8 658 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 SGO1Q5FBB7 561 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 FAM180BQ6P0A1 224 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 ZNF474Q6S9Z5 364 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 NPSR1Q6W5P4 371 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 C20orf204Q6ZNR8 217 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 BTLAQ7Z6A9 289 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms