RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 NUDT2P50583 147 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 UCNP55089 124 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PRR5P85299 388 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PLIN5Q00G26 463 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TLE3Q04726 772 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MGAT2Q10469 447 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 FUT7Q11130 342 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 NCF4Q15080 339 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ELAVL1Q15717 326 aaKnown RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 ZNF750Q32MQ0 723 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MINDY4Q4G0A6 757 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 DNAL1Q4LDG9 190 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ANKRD39Q53RE8 183 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 C6orf10Q5SRN2 563 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MFSD4BQ5TF39 518 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 AP1ARQ63HQ0 302 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 REP15Q6BDI9 236 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 FAM180BQ6P0A1 224 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 RINLQ6ZS11 566 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ZNF551Q7Z340 670 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 C6orf120Q7Z4R8 191 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 THAP5Q7Z6K1 395 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ARPINQ7Z6K5 226 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ANKRD46Q86W74 232 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TMEM151BQ8IW70 566 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CLECL1Q8IZS7 167 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PGAM4Q8N0Y7 254 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MORN4Q8NDC4 146 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 RBM15BQ8NDT2 890 aaKnown RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 OR8J3Q8NGG0 315 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 OR4A15Q8NGL6 344 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SFXN5Q8TD22 340 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ZFP90Q8TF47 636 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PTPMT1Q8WUK0 201 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 PPWD1Q96BP3 646 aaKnown RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 SENP5Q96HI0 755 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 NAF1Q96HR8 494 aaKnown RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 SLC45A3Q96JT2 553 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ART5Q96L15 291 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 IP6K3Q96PC2 410 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CGREF1Q99674 301 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TRIM4Q9C037 500 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PRDM14Q9GZV8 571 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PRORYQ9H606 182 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 EPS8L2Q9H6S3 715 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CXorf21Q9HAI6 301 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TPT1P8Q9HAU6 139 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ADAP2Q9NPF8 381 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SLAMF7Q9NQ25 335 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SIRT3Q9NTG7 399 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 SLC25A37Q9NYZ2 338 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 FOXJ2Q9P0K8 574 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 VAPAQ9P0L0 249 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TMEM181Q9P2C4 612 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CTSFQ9UBX1 484 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 C19orf25Q9UFG5 118 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 C3orf18Q9UK00 162 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TCFL5Q9UL49 500 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PPIEQ9UNP9 301 aaKnown RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 C19orf53Q9UNZ5 99 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 CORO2BQ9UQ03 480 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SLC5A6Q9Y289 635 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CLCA3PQ9Y6N3 262 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MGAQ8IWI9 3026 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 A0A1W2PQ72 361 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 TTC36A6NLP5 189 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 DUXAA6NLW8 204 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 UPK1AO00322 258 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 OR10H2O60403 315 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CNOT3O75175 753 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 CDC123O75794 336 aaPredicted RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 DNAJC8O75937 253 aaPredicted RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 IFNA16P05015 189 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 GSNP06396 782 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 ICAM2P13598 275 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 NT5EP21589 574 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 SLC6A2P23975 617 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 FOLR3P41439 243 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CDKN2CP42773 168 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CPA2P48052 419 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 ANXA11P50995 505 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 TMPRSS3P57727 454 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 OR4D2P58180 307 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 PSME3P61289 254 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CXADRP78310 365 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 MXRA7P84157 204 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 SLC25A3Q00325 362 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 ID2Q02363 134 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 DUSP2Q05923 314 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 TRMT12Q53H54 448 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 ZNF628Q5EBL2 1059 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 FHL5Q5TD97 284 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 SAXO2Q658L1 398 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 FAM198BQ6UWH4 519 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 ASRGL1Q7L266 308 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 GPR155Q7Z3F1 870 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CPEB2Q7Z5Q1 589 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 ANKRD37Q7Z713 158 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 DHDDSQ86SQ9 333 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 SLC15A3Q8IY34 581 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms