RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TRIM45Q9H8W5 580 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GALNT9Q9HCQ5 603 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 KNL1Q8NG31 2342 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 CXorf51AA0A1B0GTR3 108 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 UBXN7O94888 489 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 PCCBP05166 539 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 HTR2BP41595 481 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 EFNB1P98172 346 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 FUT5Q11128 374 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 FAPQ12884 760 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 NDUFA9Q16795 377 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF311Q5JNZ3 666 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 JPH3Q8WXH2 748 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SNAPC3Q92966 411 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SECISBP2Q96T21 854 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 GDF15Q99988 308 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 ARHGAP9Q9BRR9 750 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 RHBGQ9H310 441 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 SEMA4GQ9NTN9 838 aa8.7□□□□□ -1.02
LIMCH1-215ENST00000512632 C17orf113A0A1B0GUU1 675 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM129A0AVI4 362 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ERVH48-1M5A8F1 160 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 LYRM1O43325 122 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TSC22D2O75157 780 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ALX3O95076 343 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GABRA5P31644 462 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TRIM23P36406 574 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 RNF144AP50876 292 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ENTPD8Q5MY95 495 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 OR4C11Q6IEV9 310 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 IL20RBQ6UXL0 311 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GALNT6Q8NCL4 622 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SPRYD4Q8WW59 207 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 FGF11Q92914 225 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 LRIG1Q96JA1 1093 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF514Q96K75 400 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 HDHD2Q9H0R4 259 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TMEM245Q9H330 911 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 RBFOX1Q9NWB1 397 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 MCUBQ9NWR8 336 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ATG4BQ9Y4P1 393 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 HSPB11Q9Y547 144 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ERI3O43414 337 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 PRNPP04156 253 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TRAPPC2P0DI81 140 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TRAPPC2BP0DI82 140 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ADRB3P13945 408 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 CSF2RAP15509 400 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 EVX1P49640 407 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 PPP3R1P63098 170 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 CSTF1Q05048 431 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ARHGAP15Q53QZ3 475 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 RNLSQ5VYX0 342 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 C18orf63Q68DL7 685 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GRASPQ7Z6J2 395 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 OR4Q3Q8NH05 313 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 UPRTQ96BW1 309 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 DDX31Q9H8H2 851 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 FGF20Q9NP95 211 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ACSS1Q9NUB1 689 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SNTNA6NMZ2 147 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GABRPO00591 440 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SOCS6O14544 535 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 PLOD3O60568 738 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 FCMRO60667 390 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 PRKAR1AP10644 381 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 CPN2P22792 545 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TRHRP34981 398 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GNG2P59768 71 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 CSNK1G2P78368 415 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 CAMK2BQ13554 666 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 MZT2BQ6NZ67 158 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 IL17RCQ8NAC3 791 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 LINC01555Q8NAE3 123 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 KAT2AQ92830 837 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 FERD3LQ96RJ6 166 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 AICDAQ9GZX7 198 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 IMP3Q9NV31 184 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 PTGFRNQ9P2B2 879 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 UNC80Q8N2C7 3258 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TCF20Q9UGU0 1960 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ZC3H12DA2A288 527 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 STK25O00506 426 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ACP5P13686 325 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GSTM3P21266 225 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SDHBP21912 280 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 NTSP30990 170 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 VIPR2P41587 438 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 MLLT3P42568 568 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 GZMKP49863 264 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 TAS2R38P59533 333 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF155Q12901 538 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ZNF77Q15935 545 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 BTBD16Q32M84 506 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 MINDY4Q4G0A6 757 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 IDNKQ5T6J7 187 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 OR7G1Q8NGA0 311 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 OR51G2Q8NGK0 314 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 DEDD2Q8WXF8 326 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SMG7Q92540 1137 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms