RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 SNPHO15079 494 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 LSM1O15116 133 aaKnown RBP21.4■■□□□ 1.02
C9orf3-215ENST00000478473 COQ9O75208 318 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 CHRNGP07510 517 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 CORO7P57737 925 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 PSG6Q00889 435 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 CRYZQ08257 329 aaKnown RBP21.4■■□□□ 1.02
C9orf3-215ENST00000478473 VASNQ6EMK4 673 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 ZNF585AQ6P3V2 769 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 TMBIM1Q969X1 311 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 OSBPL11Q9BXB4 747 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 PARD6BQ9BYG5 372 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 TRIM8Q9BZR9 551 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 METTL7AQ9H8H3 244 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 TNFRSF10DQ9UBN6 386 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 TRAF6Q9Y4K3 522 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 PTGDR2Q9Y5Y4 395 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 DCHS2Q6V1P9 2916 aa21.4■■□□□ 1.02
C9orf3-215ENST00000478473 TOXO94900 526 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 CHEK2O96017 543 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 COX6B1P14854 86 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 FRKP42685 505 aaPredicted RBP21.39■■□□□ 1.01
C9orf3-215ENST00000478473 MASP1P48740 699 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 NCBP2P52298 156 aaKnown RBP eCLIP21.39■■□□□ 1.016e-7■■■■■ 27.1
C9orf3-215ENST00000478473 PNLIPRP2P54317 469 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 PDE7AQ13946 482 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 RFTN2Q52LD8 501 aaPredicted RBP21.39■■□□□ 1.01
C9orf3-215ENST00000478473 C1orf185Q5T7R7 199 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 LIX1Q8N485 282 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 HOXB13Q92826 284 aaPredicted RBP21.39■■□□□ 1.01
C9orf3-215ENST00000478473 TMCO6Q96DC7 493 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 ELP4Q96EB1 424 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 TIMP4Q99727 224 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 MECRQ9BV79 373 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 PRDM14Q9GZV8 571 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 EXO5Q9H790 373 aa21.39■■□□□ 1.01
C9orf3-215ENST00000478473 EML4Q9HC35 981 aaKnown RBP21.39■■□□□ 1.01
C9orf3-215ENST00000478473 PRAMEF25A6NGN4 478 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 AHRRA9YTQ3 701 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 FAM47E-STBD1D6RA91 191 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 UPK1AO00322 258 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 SPAG7O75391 227 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 JUNP05412 331 aaKnown RBP21.38■■□□□ 1.01
C9orf3-215ENST00000478473 CREB1P16220 341 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 SDC1P18827 310 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 NTSP30990 170 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 EFR3AQ14156 821 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 CYP27C1Q4G0S4 372 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 XKR7Q5GH72 579 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 RIPPLY2Q5TAB7 128 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 ULK2Q8IYT8 1036 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 ZNF295-AS1Q8N0V1 137 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 WDSUB1Q8N9V3 476 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 OR1J4Q8NGS1 313 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 NTMQ9P121 344 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 FREM3P0C091 2139 aa21.38■■□□□ 1.01
C9orf3-215ENST00000478473 CREBBPQ92793 2442 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 TTC36A6NLP5 189 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 CBR3O75828 277 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 BPGMP07738 259 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 ARRB2P32121 409 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 MC3RP41968 323 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 TNFAIP8L3Q5GJ75 292 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 ANGPTL8Q6UXH0 198 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 GDF7Q7Z4P5 450 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 CCDC71Q8IV32 467 aaPredicted RBP21.37■■□□□ 1.01
C9orf3-215ENST00000478473 TWIST2Q8WVJ9 160 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 MTERF3Q96E29 417 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 C14orf79Q96F83 325 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 REEP4Q9H6H4 257 aa21.37■■□□□ 1.01
C9orf3-215ENST00000478473 SSU72Q9NP77 194 aaKnown RBP21.37■■□□□ 1.01
C9orf3-215ENST00000478473 MRPS18CQ9Y3D5 142 aaKnown RBP21.37■■□□□ 1.01
C9orf3-215ENST00000478473 A0A0G2JNJ9 132 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 NME6O75414 186 aaPredicted RBP21.36■■□□□ 1.01
C9orf3-215ENST00000478473 REM1O75628 298 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 TUBBP07437 444 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 LINC00032P0C843 101 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 ADH7P40394 386 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 MAP3K8P41279 467 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 ZFP36L2P47974 494 aaKnown RBP21.36■■□□□ 1.01
C9orf3-215ENST00000478473 TRPC1P48995 793 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 GAS1P54826 345 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 MRPS22P82650 360 aaKnown RBP21.36■■□□□ 1.01
C9orf3-215ENST00000478473 ZNF844Q08AG5 666 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 SEM1Q6ZVN7 128 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 PM20D2Q8IYS1 436 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 CDC26Q8NHZ8 85 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 ADOQ96SZ5 270 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 LMF2Q9BU23 707 aaKnown RBP21.36■■□□□ 1.01
C9orf3-215ENST00000478473 OR2B2Q9GZK3 357 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 GALNT9Q9HCQ5 603 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 KCNJ16Q9NPI9 418 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 Q9UFV3 132 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.36■■□□□ 1.01
C9orf3-215ENST00000478473 V9GYY5 206 aaPredicted RBP21.36■■□□□ 1.01
C9orf3-215ENST00000478473 MYO9AB2RTY4 2548 aa21.36■■□□□ 1.01
C9orf3-215ENST00000478473 TMEM233B4DJY2 109 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 GNB5O14775 395 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 TRAPPC6AO75865 159 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 EPPINO95925 133 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms