RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SHISA5Q8N114 240 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SLC16A11Q8NCK7 471 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 FGF11Q92914 225 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SLC35A4Q96G79 324 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ASPNQ9BXN1 380 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 SACM1LQ9NTJ5 587 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 OR6C2Q9NZP2 312 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 KLF15Q9UIH9 416 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 MKLN1Q9UL63 735 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CFL2Q9Y281 166 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 CARD8Q9Y2G2 431 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 HEBP2Q9Y5Z4 205 aa8.39□□□□□ -1.07
SYNE1-217ENST00000466159 ISPDA4D126 451 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SAGE2PA6NJ88 616 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 FAM170BA6NMN3 283 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 MED26O95402 600 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 KLF8O95600 359 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 NR2F6P10588 404 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 HOXB2P14652 356 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TSFMP43897 325 aaKnown RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TGM4P49221 684 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ARFIP1P53367 373 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 NDUFA9Q16795 377 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM31Q5JXX7 168 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 CLEC12AQ5QGZ9 265 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SDE2Q6IQ49 451 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 C16orf62Q7Z3J2 963 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 LINC00471Q8N535 108 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ZBTB8BQ8NAP8 495 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 PROKR2Q8NFJ6 384 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 OR7G2Q8NG99 324 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 OR8D4Q8NGM9 314 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ZCCHC10Q8TBK6 192 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 DOK4Q8TEW6 326 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SLC9A6Q92581 669 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 FAM46AQ96IP4 442 aaKnown RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 C10orf90Q96M02 699 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 GABRG3Q99928 467 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ACTRT3Q9BYD9 372 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 BARHL1Q9BZE3 327 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SAP130Q9H0E3 1048 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 KLHL25Q9H0H3 589 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM168Q9H0V1 697 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SRMSQ9H3Y6 488 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM74BQ9NUR3 256 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TESQ9UGI8 421 aaKnown RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SLC13A4Q9UKG4 626 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 UGT2A1Q9Y4X1 527 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 PCDHGB6Q9Y5F9 930 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 CEP290O15078 2479 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 MYL12BO14950 172 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 P2RX6O15547 441 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 EGFP01133 1207 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SPNP16150 400 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 PTNP21246 168 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 PSMA1P25786 263 aaKnown RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ACTR1BP42025 376 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 SMSP52788 366 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ACTR1AP61163 376 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 DEFB134Q4QY38 66 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 FLYWCH1Q4VC44 716 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ATAT1Q5SQI0 421 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF730Q6ZMV8 503 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 USP30Q70CQ3 517 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ASPGQ86U10 573 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 NKAIN4Q8IVV8 208 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 PHC2Q8IXK0 858 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ADAMTS15Q8TE58 950 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 DIO2Q92813 273 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 HPS1Q92902 700 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 GAL3ST3Q96A11 431 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 ARHGDIGQ99819 225 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 NKX2-4Q9H2Z4 354 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 RERGLQ9H628 205 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM165Q9HC07 324 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 NDUFB11Q9NX14 153 aa8.38□□□□□ -1.07
SYNE1-217ENST00000466159 LYARQ9NX58 379 aaKnown RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 DIMT1Q9UNQ2 313 aaKnown RBP8.38□□□□□ -1.07
SYNE1-217ENST00000466159 PNMA8CA0A1B0GUJ8 204 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SYT5O00445 386 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 LRRTM2O43300 516 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ASNA1O43681 348 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 KDM1AO60341 852 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CTSVO60911 334 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RAB36O95755 333 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ACADMP11310 421 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 ENDOUP21128 410 aaKnown RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 GSTM3P21266 225 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CPN2P22792 545 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 EIF2B2P49770 351 aaKnown RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 GAS1P54826 345 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RPS15AP62244 130 aaKnown RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SIM1P81133 766 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 TFF2Q03403 129 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 RGS1Q08116 209 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 HYAL1Q12794 435 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 MLLT11Q13015 90 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-217ENST00000466159 CARTPTQ16568 116 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SPANXN2Q5MJ10 180 aa8.37□□□□□ -1.07
SYNE1-217ENST00000466159 SLC25A30Q5SVS4 291 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms