RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CLDN14O95500 239 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 NUP214P35658 2090 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-205ENST00000465238 SOX18P35713 384 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 MC3RP41968 323 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 FRKP42685 505 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-205ENST00000465238 UFM1P61960 85 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 TMEM198Q66K66 360 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 OPN5Q6U736 354 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 CHERPQ8IWX8 916 aaKnown RBP16.32■□□□□ 0.2
COL7A1-205ENST00000465238 TAGAPQ8N103 731 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 SLC15A4Q8N697 577 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 SIMC1Q8NDZ2 872 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 PHF10Q8WUB8 498 aaKnown RBP16.32■□□□□ 0.2
COL7A1-205ENST00000465238 EBF4Q9BQW3 602 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 SIKE1Q9BRV8 207 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 CCDC134Q9H6E4 229 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 ANKRA2Q9H9E1 313 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 NPHS2Q9NP85 383 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 DDX18Q9NVP1 670 aaKnown RBP16.32■□□□□ 0.2
COL7A1-205ENST00000465238 TAS2R9Q9NYW1 312 aa16.32■□□□□ 0.2
COL7A1-205ENST00000465238 A8MVJ9 347 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 E9PLN8 166 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 TFECO14948 347 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 ANKRD28O15084 1053 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 TROVE2P10155 538 aaKnown RBP eCLIP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 EFNA1P20827 205 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 GPX3P22352 226 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 SOX3P41225 446 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 MEOX1P50221 254 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 EMDP50402 254 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 NR0B1P51843 470 aaKnown RBP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 DCAF7P61962 342 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 HSF1Q00613 529 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 DUSP8Q13202 625 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 MLC1Q15049 377 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 DPY19L1Q2PZI1 675 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 PDCD4Q53EL6 469 aaKnown RBP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 CAMKMTQ7Z624 323 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 DOLPP1Q86YN1 238 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 GPALPP1Q8IXQ4 340 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 CYP4Z2PQ8N1L4 340 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 VPS37AQ8NEZ2 397 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 OR5P2Q8WZ92 322 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 TESCQ96BS2 214 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 MARK4Q96L34 752 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 PHF12Q96QT6 1004 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 VKORC1Q9BQB6 163 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 C3orf14Q9HBI5 128 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 RYDENQ9NUL5 291 aaKnown RBP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 FGFR1OP2Q9NVK5 253 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 HPF1Q9NWY4 346 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 DCTN4Q9UJW0 460 aa16.31■□□□□ 0.2
COL7A1-205ENST00000465238 C19orf53Q9UNZ5 99 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-205ENST00000465238 E9PBE3 544 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 UPK1AO00322 258 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 CFLARO15519 480 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 SLC22A3O75751 556 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 OR6B1O95007 311 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 SNRPB2P08579 225 aaKnown RBP16.3■□□□□ 0.2
COL7A1-205ENST00000465238 IFI6P09912 130 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 S100A3P33764 101 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 KIR3DL1P43629 444 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 NRG3P56975 720 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 STX1BP61266 288 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 ANXA8L1Q5VT79 327 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 OR4F3Q6IEY1 312 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 IL20RBQ6UXL0 311 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 SULF2Q8IWU5 870 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 MIER2Q8N344 545 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 OR2L13Q8N349 312 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 ZNF441Q8N8Z8 693 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 C17orf47Q8NEP4 570 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 OR8J2Q8NGG1 315 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 ADIPOR1Q96A54 375 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 LCORQ96JN0 433 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-205ENST00000465238 RILPQ96NA2 401 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 ITPAQ9BY32 194 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 PCDHGB4Q9UN71 923 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 DTX4Q9Y2E6 619 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 POLQO75417 2590 aa16.3■□□□□ 0.2
COL7A1-205ENST00000465238 CSMD2Q7Z408 3487 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 A0A0G2JND7 137 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 ZNHIT1O43257 154 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 PEX1O43933 1283 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 NADKO95544 446 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-205ENST00000465238 C6orf47O95873 294 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 DRD5P21918 477 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 PPICP45877 212 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 CDK9P50750 372 aaKnown RBP16.29■□□□□ 0.2
COL7A1-205ENST00000465238 CDSNQ15517 529 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 SZRD1Q7Z422 152 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 FGD2Q7Z6J4 655 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 ZFP62Q8NB50 900 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-205ENST00000465238 GLB1L3Q8NCI6 653 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-205ENST00000465238 RFWD2Q8NHY2 731 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 STON2Q8WXE9 905 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 HSPBAP1Q96EW2 488 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 TEX37Q96LM6 180 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 DMRTA2Q96SC8 542 aa16.29■□□□□ 0.2
COL7A1-205ENST00000465238 TRIM8Q9BZR9 551 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms