RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CRABP2P29373 138 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 SPRP35270 261 aaPredicted RBP12.49□□□□□ -0.41
VPS29-201ENST00000360579 DEKP35659 375 aaKnown RBP12.49□□□□□ -0.41
VPS29-201ENST00000360579 PIK3CGP48736 1102 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 SIRPAP78324 504 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 KRTAP1-1Q07627 177 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 EFR3AQ14156 821 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 C10orf62Q5T681 223 aaPredicted RBP12.49□□□□□ -0.41
VPS29-201ENST00000360579 CYS1Q717R9 158 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 GAS2L3Q86XJ1 694 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 LRRC8AQ8IWT6 810 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 PHC2Q8IXK0 858 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 UBQLNLQ8IYU4 475 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ZNF611Q8N823 705 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 L3MBTL4Q8NA19 623 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ANKK1Q8NFD2 765 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ADCY4Q8NFM4 1077 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 RHEBL1Q8TAI7 183 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 WDR20Q8TBZ3 569 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 PYROXD1Q8WU10 500 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 SLC35A4Q96G79 324 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 KLHL4Q9C0H6 718 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 RNF122Q9H9V4 155 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 FANCFQ9NPI8 374 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 MAT2BQ9NZL9 334 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 HEY2Q9UBP5 337 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ZNF639Q9UID6 485 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 PSME2Q9UL46 239 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 PLLPQ9Y342 182 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ZNF175Q9Y473 711 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ANK2Q01484 3957 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 EXPH5Q8NEV8 1989 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 CXorf49A8MYA2 514 aaPredicted RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 ZIC3O60481 467 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 REM1O75628 298 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 BCAS2O75934 225 aaPredicted RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 KLK1P06870 262 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 C8BP07358 591 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 LTA4HP09960 611 aaKnown RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 FCGR2AP12318 317 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 GFAPP14136 432 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 NID1P14543 1247 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 GRK2P25098 689 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 KRT20P35900 424 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 NEK2P51955 445 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 DSCR4P56555 118 aaPredicted RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 MRPS22P82650 360 aaKnown RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 OCRLQ01968 901 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 MGAT2Q10469 447 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 VEZF1Q14119 521 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 CAPRIN1Q14444 709 aaKnown RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 EXOSC7Q15024 291 aaKnown RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 CLEC12BQ2HXU8 276 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 CCNYL2Q5T2Q4 361 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 SLC48A1Q6P1K1 146 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 METTL2BQ6P1Q9 378 aaKnown RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 FAM111BQ6SJ93 734 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 ZNF610Q8N9Z0 462 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 OR4K17Q8NGC6 315 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 OR52R1Q8NGF1 315 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 TRPC4APQ8TEL6 797 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 FIG4Q92562 907 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 TMBIM1Q969X1 311 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 IPPKQ9H8X2 491 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 ACOT9Q9Y305 439 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 PCDHA9Q9Y5H5 950 aa12.48□□□□□ -0.41
VPS29-201ENST00000360579 TNPO3Q9Y5L0 923 aaKnown RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 RAI1Q7Z5J4 1906 aaPredicted RBP12.48□□□□□ -0.41
VPS29-201ENST00000360579 UQCRHLA0A096LP55 91 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 RNF223E7ERA6 249 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 HS3ST1O14792 307 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 TP73O15350 636 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 ERAL1O75616 437 aaKnown RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 CLDN9O95484 217 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 CBX7O95931 251 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 MTHFD2P13995 350 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 SSTR1P30872 391 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 EMDP50402 254 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 MAPK12P53778 367 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 ALDH18A1P54886 795 aaKnown RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 B3GALT5-AS1P59052 145 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 GPX6P59796 221 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 RPS4XP62701 263 aaKnown RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 DLG1Q12959 904 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 GTF2H2Q13888 395 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 SLMAPQ14BN4 828 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 PFKFB4Q16877 469 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 GRTP1Q5TC63 336 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 ANKRD34AQ69YU3 496 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 GTF2H2CQ6P1K8 395 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 FAM214BQ7L5A3 538 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 CCDC91Q7Z6B0 441 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 HIPK1Q86Z02 1210 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 KLHL7Q8IXQ5 586 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 GFM2Q969S9 779 aaKnown RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 TRMT61AQ96FX7 289 aaKnown RBP12.47□□□□□ -0.41
VPS29-201ENST00000360579 BTBD9Q96Q07 612 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 ADOQ96SZ5 270 aa12.47□□□□□ -0.41
VPS29-201ENST00000360579 PINK1Q9BXM7 581 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms