RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TMEM220Q6QAJ8 160 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 FAM111BQ6SJ93 734 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ISLR2Q6UXK2 745 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 Q6ZPB1 254 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 EIF3MQ7L2H7 374 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 PRSS41Q7RTY9 318 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 PATL1Q86TB9 770 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 NR2C2APQ86WQ0 139 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 DHFR2Q86XF0 187 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TCAIMQ8N3R3 496 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ZCCHC7Q8N3Z6 543 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 HORMAD2Q8N7B1 307 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 FAM71CQ8NEG0 241 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 OR8D4Q8NGM9 314 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 OR9A1PQ8NGU1 263 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 STT3BQ8TCJ2 826 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SLC26A7Q8TE54 656 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SETD7Q8WTS6 366 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 MRPS31Q92665 395 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 GFM2Q969S9 779 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 ANKRD9Q96BM1 317 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 RILPQ96NA2 401 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TSNARE1Q96NA8 513 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 ARHGDIGQ99819 225 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TIMM29Q9BSF4 260 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 OSBPL11Q9BXB4 747 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 EBPLQ9BY08 206 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 MRPS26Q9BYN8 205 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 RTN4RQ9BZR6 473 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SLIRPQ9GZT3 109 aaKnown RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 LHPPQ9H008 270 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 MVB12BQ9H7P6 319 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 GPN2Q9H9Y4 310 aaPredicted RBP2.15□□□□□ -2.06
VPS54-202ENST00000354504 SLC2A4RGQ9NR83 387 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 NDE1Q9NXR1 346 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 OSGIN1Q9UJX0 560 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TMEM98Q9Y2Y6 226 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 SH3BP1Q9Y3L3 701 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 OR1A2Q9Y585 309 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 DGKBQ9Y6T7 804 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 FREM3P0C091 2139 aa2.15□□□□□ -2.06
VPS54-202ENST00000354504 TMEM200CA6NKL6 621 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GPR89AB7ZAQ6 455 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 IFNL4K9M1U5 179 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CXCR6O00574 342 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PGRMC2O15173 223 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 AHCYL1O43865 530 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 LDB3O75112 727 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ERN1O75460 977 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 SULT1C4O75897 302 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 IGFBP1P08833 259 aaPredicted RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 CT62P0C5K7 136 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GPR89BP0CG08 455 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CD37P11049 281 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 NELFEP18615 380 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 HK1P19367 917 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ETV6P41212 452 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 TRPC1P48995 793 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GABARAPL2P60520 117 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SELENOWP63302 87 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CDK5Q00535 292 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ABHD18Q0P651 414 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PRKG2Q13237 762 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SPCS2Q15005 226 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 MEP1AQ16819 746 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 LRRC36Q1X8D7 754 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ATP6AP1LQ52LC2 224 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.15□□□□□ -2.07
VPS54-202ENST00000354504 SYT6Q5T7P8 510 aaPredicted RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 CRIP3Q6Q6R5 217 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OLIG3Q7RTU3 272 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ARIH2OSQ8N7S6 290 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 EXD3Q8N9H8 876 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FNDC5Q8NAU1 212 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DYNC2LI1Q8TCX1 351 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CSGALNACT1Q8TDX6 532 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ADAMTS17Q8TE56 1095 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OR1E3Q8WZA6 343 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DNASE1L2Q92874 299 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SH3KBP1Q96B97 665 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ISOC1Q96CN7 298 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 TUBGCP3Q96CW5 907 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 MTFMTQ96DP5 389 aaKnown RBP2.15□□□□□ -2.07
VPS54-202ENST00000354504 ERLEC1Q96DZ1 483 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 NRBF2Q96F24 287 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PYURFQ96I23 114 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 PPP3R2Q96LZ3 170 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 AMDHD1Q96NU7 426 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 KXD1Q9BQD3 176 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GPR63Q9BZJ6 419 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 ATG10Q9H0Y0 220 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 OR2AG1Q9H205 316 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 SLC38A1Q9H2H9 487 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 GLIPR2Q9H4G4 154 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 CD274Q9NZQ7 290 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 VPS29Q9UBQ0 182 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 FZD4Q9ULV1 537 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 VPS4AQ9UN37 437 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DTX4Q9Y2E6 619 aa2.15□□□□□ -2.07
VPS54-202ENST00000354504 DTNAQ9Y4J8 743 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms