RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CAB39Q9Y376 341 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CHST2Q9Y4C5 530 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 A0A1W2PQF6 199 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 EPOPA6NHQ4 379 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CTDSP2O14595 271 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 RAB36O95755 333 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 HOXB2P14652 356 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CRYBB2P43320 205 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 EFNB1P98172 346 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CDC20Q12834 499 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 PRICKLE2Q7Z3G6 844 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CCL4L1Q8NHW4 92 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 TEX47Q8TBZ9 253 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 ITPKCQ96DU7 683 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 TRMT61AQ96FX7 289 aaKnown RBP20.43■□□□□ 0.86
SHMT1-202ENST00000352886 ACTRT3Q9BYD9 372 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CPNE5Q9HCH3 593 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 SEMA4GQ9NTN9 838 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 NDUFB11Q9NX14 153 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 ZNF624Q9P2J8 865 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-202ENST00000352886 SEC14L4Q9UDX3 406 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 DIMT1Q9UNQ2 313 aaKnown RBP20.43■□□□□ 0.86
SHMT1-202ENST00000352886 FAM170BA6NMN3 283 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 NTN1O95631 604 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ACADMP11310 421 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 RPS19P39019 145 aaKnown RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 AVPR1BP47901 424 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 RPS15AP62244 130 aaKnown RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 RGS1Q08116 209 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 MLLT11Q13015 90 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 C6orf132Q5T0Z8 1188 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 LIPKQ5VXJ0 399 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ANKRD54Q6NXT1 300 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 FAM111BQ6SJ93 734 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ASPGQ86U10 573 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 C11orf74Q86VG3 221 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 FGF11Q92914 225 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 COL26A1Q96A83 441 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 SRMSQ9H3Y6 488 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 POLMQ9NP87 494 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 INIPQ9NRY2 104 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 CALML5Q9NZT1 146 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 CNIH4Q9P003 139 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 TESQ9UGI8 421 aaKnown RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 PCDHGB6Q9Y5F9 930 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 PNMA8CA0A1B0GUJ8 204 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 FCMRO60667 390 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ZIC2O95409 532 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 TRHRP34981 398 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 MLLT1Q03111 559 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ZNF730Q6ZMV8 503 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 NCCRP1Q6ZVX7 275 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ADAMTS15Q8TE58 950 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 DIO2Q92813 273 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 C10orf90Q96M02 699 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 MIR1-1HGQ9H1L0 117 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 STUB1Q9UNE7 303 aa20.42■□□□□ 0.86
SHMT1-202ENST00000352886 ETV5P41161 510 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 ETV6P41212 452 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 ETV1P50549 477 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 PDX1P52945 283 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 HOXC5Q00444 222 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 TRAM2Q15035 370 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 SLC27A4Q6P1M0 643 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 GDPGP1Q6ZNW5 385 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 USP30Q70CQ3 517 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 CCDC190Q86UF4 302 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 PHC2Q8IXK0 858 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 OR7G2Q8NG99 324 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 GNPDA2Q8TDQ7 276 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 TSACCQ96A04 125 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-202ENST00000352886 SLC35A4Q96G79 324 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 FAM46AQ96IP4 442 aaKnown RBP20.41■□□□□ 0.86
SHMT1-202ENST00000352886 SAP130Q9H0E3 1048 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 LMAN2LQ9H0V9 348 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 GPR52Q9Y2T5 361 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 APOL3O95236 402 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 MAGP20916 626 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 NDUFS1P28331 727 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 IFNGR2P38484 337 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 EIF2B2P49770 351 aaKnown RBP20.41■□□□□ 0.86
SHMT1-202ENST00000352886 MAP4K2Q12851 820 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 ATAT1Q5SQI0 421 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 SLC16A11Q8NCK7 471 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 OR8D4Q8NGM9 314 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 ZCCHC10Q8TBK6 192 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 SLC9A6Q92581 669 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 CEP19Q96LK0 163 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 CRNNQ9UBG3 495 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-202ENST00000352886 KLHL3Q9UH77 587 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 CARD8Q9Y2G2 431 aa20.41■□□□□ 0.86
SHMT1-202ENST00000352886 A0A075B6Q4 140 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 RFXAPO00287 272 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 DLGAP3O95886 979 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 SLC35G6P0C7Q6 338 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 CCNYL3P0C7X3 344 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 ACTR1BP42025 376 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 KIAA1024LP59773 190 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 ACTR1AP61163 376 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 ST3GAL3Q11203 375 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms