RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 OPRL1P41146 370 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 SLC15A1P46059 708 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 PDX1P52945 283 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 C21orf59P57076 290 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 PPP1CAP62136 330 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 MFSD12Q6NUT3 480 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 TDHQ8IZJ6 230 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 CAMKVQ8NCB2 501 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 LGALS12Q96DT0 336 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 ARHGDIGQ99819 225 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 CLN6Q9NWW5 311 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 C2orf42Q9NWW7 574 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 LIPT1Q9Y234 373 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 PRUNE2Q8WUY3 3088 aa19■□□□□ 0.63
CLN3-230ENST00000568076 hCG_2014768A0A024R1R8 64 aa19■□□□□ 0.63
CLN3-230ENST00000568076 URADA6NGE7 173 aa19■□□□□ 0.63
CLN3-230ENST00000568076 M0R3G1 203 aa19■□□□□ 0.63
CLN3-230ENST00000568076 SYT5O00445 386 aa19■□□□□ 0.63
CLN3-230ENST00000568076 ENTPD6O75354 484 aa19■□□□□ 0.63
CLN3-230ENST00000568076 ALPPP05187 535 aa19■□□□□ 0.63
CLN3-230ENST00000568076 EIF2S1P05198 315 aaKnown RBP19■□□□□ 0.63
CLN3-230ENST00000568076 ALOX12P18054 663 aa19■□□□□ 0.63
CLN3-230ENST00000568076 SNRPGP62308 76 aaKnown RBP19■□□□□ 0.63
CLN3-230ENST00000568076 FZD2Q14332 565 aa19■□□□□ 0.63
CLN3-230ENST00000568076 HEPHL1Q6MZM0 1159 aa19■□□□□ 0.63
CLN3-230ENST00000568076 ABHD13Q7L211 337 aa19■□□□□ 0.63
CLN3-230ENST00000568076 C16orf62Q7Z3J2 963 aa19■□□□□ 0.63
CLN3-230ENST00000568076 IQCHQ86VS3 1027 aa19■□□□□ 0.63
CLN3-230ENST00000568076 ZNF761Q86XN6 746 aaPredicted RBP19■□□□□ 0.63
CLN3-230ENST00000568076 OR2L13Q8N349 312 aa19■□□□□ 0.63
CLN3-230ENST00000568076 PLEKHA8Q96JA3 519 aa19■□□□□ 0.63
CLN3-230ENST00000568076 MS4A4EQ96PG1 132 aa19■□□□□ 0.63
CLN3-230ENST00000568076 GSDMCQ9BYG8 508 aa19■□□□□ 0.63
CLN3-230ENST00000568076 SLC25A19Q9HC21 320 aa19■□□□□ 0.63
CLN3-230ENST00000568076 HRASLS2Q9NWW9 162 aa19■□□□□ 0.63
CLN3-230ENST00000568076 CNOT2Q9NZN8 540 aaKnown RBP19■□□□□ 0.63
CLN3-230ENST00000568076 ENTPD2Q9Y5L3 495 aa19■□□□□ 0.63
CLN3-230ENST00000568076 SPTY2D1-AS1A0A0U1RR47 76 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 GLULP15104 373 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 CCR5P51681 352 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 ID2Q02363 134 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 CD300LDQ6UXZ3 194 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 SLC46A3Q7Z3Q1 461 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 ADAMTS15Q8TE58 950 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 TRUB1Q8WWH5 349 aaKnown RBP18.99■□□□□ 0.63
CLN3-230ENST00000568076 SH3YL1Q96HL8 342 aaPredicted RBP18.99■□□□□ 0.63
CLN3-230ENST00000568076 GPR27Q9NS67 375 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 EFCAB10A6NFE3 127 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 EFCAB9A8MZ26 197 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 TNNI3P19429 210 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 RELAQ04206 551 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 DOC2BQ14184 412 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 INAVAQ3KP66 663 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 ATAD3BQ5T9A4 648 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 CDC73Q6P1J9 531 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 C1orf94Q6P1W5 598 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 FRRS1Q6ZNA5 592 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 USP53Q70EK8 1073 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 RNF44Q7L0R7 432 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 ZNF438Q7Z4V0 828 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 IQCF1Q8N6M8 205 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 TMEM52Q8NDY8 209 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 DOK4Q8TEW6 326 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 CDS1Q92903 461 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 CDCA4Q9BXL8 241 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 TBC1D23Q9NUY8 699 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 CALML5Q9NZT1 146 aa18.99■□□□□ 0.63
CLN3-230ENST00000568076 A0A0J9YY10 115 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 FAM221BA6H8Z2 402 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 HCRTR1O43613 425 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 NADKO95544 446 aaPredicted RBP18.98■□□□□ 0.63
CLN3-230ENST00000568076 NTN1O95631 604 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 THEGLP0DJG4 465 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 CPMP14384 443 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 GADD45AP24522 165 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 TLX1P31314 330 aaPredicted RBP18.98■□□□□ 0.63
CLN3-230ENST00000568076 GRK5P34947 590 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 IDUAP35475 653 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 ALDH6A1Q02252 535 aaKnown RBP18.98■□□□□ 0.63
CLN3-230ENST00000568076 C1orf61Q13536 156 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 FAM214AQ32MH5 1076 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 TMEM201Q5SNT2 666 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 TAF8Q7Z7C8 310 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 SAMD14Q8IZD0 417 aaPredicted RBP18.98■□□□□ 0.63
CLN3-230ENST00000568076 CLIP4Q8N3C7 705 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 OR5T3Q8NGG3 340 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 RERGQ96A58 199 aaPredicted RBP18.98■□□□□ 0.63
CLN3-230ENST00000568076 VMP1Q96GC9 406 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 GPR174Q9BXC1 333 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 DNAJC27Q9NZQ0 273 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 MKLN1Q9UL63 735 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 TRIOO75962 3097 aa18.98■□□□□ 0.63
CLN3-230ENST00000568076 A0A087WUU8 490 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 KIR2DS5A0A0G2JLQ3 304 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 A0A0G2JNG1 304 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 KIR2DS3K7RE56 304 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 TRHRP34981 398 aaPredicted RBP18.97■□□□□ 0.63
CLN3-230ENST00000568076 COX10Q12887 443 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 KIR2DS5Q14953 304 aa18.97■□□□□ 0.63
CLN3-230ENST00000568076 TRMT12Q53H54 448 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms