RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	JAM3	Q9BX67	310 aa		7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	MRPL1	Q9BYD6	325 aa	Known RBP	7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	NMRK1	Q9NWW6	199 aa		7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	TEX10	Q9NXF1	929 aa	Predicted RBP	7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	ZNF225	Q9UK10	706 aa		7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	NPIPA1	Q9UND3	350 aa		7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	SLC12A4	Q9UP95	1085 aa		7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	ERVK-19	Q9WJR5	959 aa		7.09	□□□□□ -1.27
SNHG1-223	ENST00000545440	MYOCOS	A0A1B0GUC4	107 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	C1orf226	A1L170	272 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	GLOD5	A6NK44	160 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440		H3BQF6	201 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	GOLGA8R	I6L899	631 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	HRK	O00198	91 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	CCL21	O00585	134 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	PPP6C	O00743	305 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	PSPN	O60542	156 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SUPT7L	O94864	414 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	OR4F21	O95013	312 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	PDYN	P01213	254 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	KRT6A	P02538	564 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	GBA	P04062	536 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	KRT6B	P04259	564 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	ENO1	P06733	434 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	KLK1	P06870	262 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SLC35E2	P0CK97	266 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	ABO	P16442	354 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	KRT15	P19012	456 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	IMPDH1	P20839	514 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	PIK3R1	P27986	724 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	HSD17B3	P37058	310 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	DCT	P40126	519 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	KRT6C	P48668	564 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	PKNOX1	P55347	436 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SLC37A1	P57057	533 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	MVK	Q03426	396 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	TBL3	Q12788	808 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	ASPH	Q12797	758 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	EBP	Q15125	230 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	C3AR1	Q16581	482 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	UNC50	Q53HI1	259 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	TMEM177	Q53S58	311 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	TEX35	Q5T0J7	233 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	CCNYL2	Q5T2Q4	361 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	NDUFAF5	Q5TEU4	345 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	CRYBG3	Q68DQ2	2970 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	IL20RB	Q6UXL0	311 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	DGAT2L6	Q6ZPD8	337 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	RGS9BP	Q6ZS82	235 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	RPS27L	Q71UM5	84 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SLC29A4	Q7RTT9	530 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	ATG4D	Q86TL0	474 aa	Predicted RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	TDRP	Q86YL5	185 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	CHERP	Q8IWX8	916 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	EID3	Q8N140	333 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	ZNF808	Q8N4W9	903 aa	Predicted RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SLC15A4	Q8N697	577 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	CDYL2	Q8N8U2	506 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	OR2M7	Q8NG81	312 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	PHF10	Q8WUB8	498 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	UBLCP1	Q8WVY7	318 aa	Predicted RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	ITLN2	Q8WWU7	325 aa	Predicted RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	MTFMT	Q96DP5	389 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SPACA9	Q96E40	222 aa	Predicted RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	YIPF4	Q9BSR8	244 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	WWTR1	Q9GZV5	400 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	LIN28A	Q9H9Z2	209 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	CXorf21	Q9HAI6	301 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	FARSB	Q9NSD9	589 aa	Known RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SACM1L	Q9NTJ5	587 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	DEPP	Q9NTK1	212 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	TBK1	Q9UHD2	729 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	DCDC2	Q9UHG0	476 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	SH3BGRL2	Q9UJC5	107 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	TINAG	Q9UJW2	476 aa		7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	NUP214	P35658	2090 aa	Predicted RBP	7.08	□□□□□ -1.28
SNHG1-223	ENST00000545440	MED12L	Q86YW9	2145 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	PCNX3	Q9H6A9	2034 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440		A0A0G2JMM0	328 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440		A0A1W2PPB8	328 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440		A0A1W2PRS3	328 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	CCDC151	A5D8V7	595 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	GOLGA6L10	A6NI86	522 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	KIR3DP1	A8MWS1	328 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	MANBA	O00462	879 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	PRRG2	O14669	202 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	HS6ST1	O60243	411 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	ZNF354A	O60765	605 aa	Predicted RBP	7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	CDH16	O75309	829 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	WISP2	O76076	250 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	GLS	O94925	669 aa	Predicted RBP	7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	NADK	O95544	446 aa	Predicted RBP	7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	ESRRB	O95718	433 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	CLPS	P04118	112 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	SHBG	P04278	402 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	ATP1B1	P05026	303 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	CPM	P14384	443 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	TSPAN8	P19075	237 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	AGA	P20933	346 aa		7.07	□□□□□ -1.28
SNHG1-223	ENST00000545440	HMOX2	P30519	316 aa		7.07	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms