RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SLC29A3Q9BZD2 475 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC25A51Q9H1U9 297 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ABCB9Q9NP78 766 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 POMT2Q9UKY4 750 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 V9GYQ6 96 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PCDH15Q96QU1 1955 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 A0A1B0GTQ1 180 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 A0A1W2PRU2 124 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC22A23A1A5C7 686 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ZAR1LA6NP61 321 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RRP8O43159 456 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 SLC28A2O43868 658 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ADRB1P08588 477 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ADORA2BP29275 332 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PTPN6P29350 595 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 KCNJ5P48544 419 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 EVX1P49640 407 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 STK19P49842 368 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 MEOX2P50222 304 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TIAL1Q01085 375 aaKnown RBP eCLIP4.98□□□□□ -1.61
USP28-213ENST00000544967 ACSM1Q08AH1 577 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CAMK2DQ13557 499 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CCINQ13939 588 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 VMACQ2NL98 169 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ZNF528Q3MIS6 628 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PLK5Q496M5 336 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PYDC2Q56P42 97 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TEX30Q5JUR7 227 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ANKRD34AQ69YU3 496 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NADSYN1Q6IA69 706 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TANGO2Q6ICL3 276 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 LIPIQ6XZB0 460 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ZNF574Q6ZN55 896 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 HFE2Q6ZVN8 426 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TRIM48Q8IWZ4 208 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PHC2Q8IXK0 858 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 DEFB106AQ8N104 65 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CARFQ8N187 725 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PYROXD2Q8N2H3 581 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NAT16Q8N8M0 369 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TMEM145Q8NBT3 493 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 BVESQ8NE79 360 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 DMBX1Q8NFW5 382 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 OR4D10Q8NGI6 311 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PPP1R35Q8TAP8 253 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 UBTD2Q8WUN7 234 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 C7orf34Q96L11 122 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CCDC74BQ96LY2 380 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 KCTD7Q96MP8 289 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RHNO1Q9BSD3 238 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 FICDQ9BVA6 458 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 PITHD1Q9GZP4 211 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 BIN3Q9NQY0 253 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 RDH8Q9NYR8 311 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 TRPS1Q9UHF7 1281 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 ING1Q9UK53 422 aaPredicted RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 CBLCQ9ULV8 474 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 NDRG2Q9UN36 371 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 CCL26Q9Y258 94 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 OR51B4Q9Y5P0 310 aa4.98□□□□□ -1.61
USP28-213ENST00000544967 CFAP20Q9Y6A4 193 aaKnown RBP4.98□□□□□ -1.61
USP28-213ENST00000544967 DSPPQ9NZW4 1301 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 A0A1W2PQL4 384 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 OR6C74A6NCV1 312 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 NCF1BA6NI72 391 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 NCF1CA8MVU1 366 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 DNASE2O00115 360 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 CCNB2O95067 398 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 EPOP01588 193 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 IGLV3-19P01714 112 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 KLKB1P03952 638 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 G6PDP11413 515 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 CCR1P32246 355 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ATP5C1P36542 298 aaKnown RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 TGM4P49221 684 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 DHPSP49366 369 aaPredicted RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 GPR143P51810 404 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 CLDN8P56748 225 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SNRPD2P62316 118 aaKnown RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 SHC2P98077 582 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 MTAPQ13126 283 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 TPBGQ13641 420 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SPHARQ15513 63 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 CDKL4Q5MAI5 379 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 LRFN4Q6PJG9 635 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 KLHL17Q6TDP4 642 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 PAMR1Q6UXH9 720 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 BAIAP2L2Q6UXY1 529 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 CFAP77Q6ZQR2 320 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 QSOX2Q6ZRP7 698 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SHFQ7M4L6 423 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 TAC4Q86UU9 113 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 Q8N402 240 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 TEX47Q8TBZ9 253 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 CLEC4CQ8WTT0 213 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SCARB1Q8WTV0 552 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 SLC9A6Q92581 669 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 ORAI1Q96D31 301 aa4.97□□□□□ -1.61
USP28-213ENST00000544967 RPL10LQ96L21 214 aaKnown RBP4.97□□□□□ -1.61
USP28-213ENST00000544967 FCRL1Q96LA6 429 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms