RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 ZIM2Q9NZV7 527 aa12.06□□□□□ -0.48
CHFR-216ENST00000538235 LRFN1Q9P244 771 aa12.06□□□□□ -0.48
CHFR-216ENST00000538235 YARS2Q9Y2Z4 477 aaKnown RBP12.06□□□□□ -0.48
CHFR-216ENST00000538235 CHCHD2Q9Y6H1 151 aaPredicted RBP12.06□□□□□ -0.48
CHFR-216ENST00000538235 RNASET2O00584 256 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 NME2P1O60361 137 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 ERN1O75460 977 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 PGRP06401 933 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 IFI6P09912 130 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 NME2P22392 152 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 ABCD3P28288 659 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 LSP1P33241 339 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 RFC3P40938 356 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 PTGDSP41222 190 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 KIR3DL1P43629 444 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 MAN2A2P49641 1150 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 MANFP55145 182 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 CASP9P55211 416 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 GPR85P60893 370 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 AP2B1P63010 937 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 OC90Q02509 493 aaPredicted RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 UBAP2LQ14157 1087 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 INPP5JQ15735 1006 aaPredicted RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 DUSP5Q16690 384 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 GSTA3Q16772 222 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 ACAD11Q709F0 780 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 GALNTL5Q7Z4T8 443 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 GALNT10Q86SR1 603 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 MSRB3Q8IXL7 192 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 SAMD14Q8IZD0 417 aaPredicted RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 CYP4Z2PQ8N1L4 340 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 C10orf111Q8N326 155 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 SLC16A11Q8NCK7 471 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 NUP43Q8NFH3 380 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 OR5P2Q8WZ92 322 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 PIK3R3Q92569 461 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 SPACA9Q96E40 222 aaPredicted RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 NODALQ96S42 347 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 UTP23Q9BRU9 249 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 LMF2Q9BU23 707 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 RTN4RQ9BZR6 473 aa12.05□□□□□ -0.48
CHFR-216ENST00000538235 DDX18Q9NVP1 670 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 CNOT11Q9UKZ1 510 aaKnown RBP12.05□□□□□ -0.48
CHFR-216ENST00000538235 PRAMEF27A3QJZ7 478 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 FRG2CA6NGY1 282 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 B8ZZF3 427 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 TO15178 435 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 ZNHIT1O43257 154 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 TSPAN2O60636 221 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 UGT2B11O75310 529 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 SLC25A12O75746 678 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 SLC22A3O75751 556 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 ZIC2O95409 532 aaPredicted RBP12.04□□□□□ -0.48
CHFR-216ENST00000538235 GSNP06396 782 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 SFTPCP11686 197 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 MST1P26927 711 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 GPC1P35052 558 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 RPL3P39023 403 aaKnown RBP12.04□□□□□ -0.48
CHFR-216ENST00000538235 CASRP41180 1078 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 PPICP45877 212 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 MVDP53602 400 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 FUT5Q11128 374 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 RCAN2Q14206 197 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 NTRK2Q16620 822 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 ZNF766Q5HY98 468 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 PAGE3Q5JUK9 113 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 PRAMEF20Q5VT98 475 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 SLC2A7Q6PXP3 512 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 RETREG3Q86VR2 466 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 CPSF7Q8N684 471 aaKnown RBP12.04□□□□□ -0.48
CHFR-216ENST00000538235 TEX19Q8NA77 164 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 PSD4Q8NDX1 1056 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 C17orf47Q8NEP4 570 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 OR5M3Q8NGP4 307 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 ZFP28Q8NHY6 868 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 RNF138Q8WVD3 245 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 ASB15Q8WXK1 588 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 TMBIM1Q969X1 311 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 TP53INP1Q96A56 240 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 SNRNP40Q96DI7 357 aaKnown RBP12.04□□□□□ -0.48
CHFR-216ENST00000538235 ERP27Q96DN0 273 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 OMA1Q96E52 524 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 LCORQ96JN0 433 aaPredicted RBP12.04□□□□□ -0.48
CHFR-216ENST00000538235 FRMD6Q96NE9 622 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 CCDC115Q96NT0 180 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 MS4A4EQ96PG1 132 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 KLHDC3Q9BQ90 382 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.04□□□□□ -0.48
CHFR-216ENST00000538235 ZCCHC3Q9NUD5 404 aaKnown RBP12.04□□□□□ -0.48
CHFR-216ENST00000538235 SLAMF8Q9P0V8 285 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 TEKT2Q9UIF3 430 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 NPFFR2Q9Y5X5 522 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 HEATR5AQ86XA9 2040 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 TENM4Q6N022 2769 aa12.04□□□□□ -0.48
CHFR-216ENST00000538235 DNAJC13O75165 2243 aa12.03□□□□□ -0.48
CHFR-216ENST00000538235 KIAA1549Q9HCM3 1950 aa12.03□□□□□ -0.48
CHFR-216ENST00000538235 DYTNA2CJ06 578 aa12.03□□□□□ -0.48
CHFR-216ENST00000538235 LRRC3CA6NJW4 275 aa12.03□□□□□ -0.48
CHFR-216ENST00000538235 A8MVJ9 347 aa12.03□□□□□ -0.48
CHFR-216ENST00000538235 NR5A2O00482 541 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms