RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MARVELD3Q96A59 401 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 NTNG2Q96CW9 530 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 ERP27Q96DN0 273 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 METTL2AQ96IZ6 378 aaKnown RBP16.43■□□□□ 0.22
UPF3A-203ENST00000474056 LRTM1Q9HBL6 345 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 C1orf109Q9NX04 203 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 QPCTLQ9NXS2 382 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 SENP1Q9P0U3 644 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 GPR55Q9Y2T6 319 aaPredicted RBP16.43■□□□□ 0.22
UPF3A-203ENST00000474056 DNAJC15Q9Y5T4 150 aa16.43■□□□□ 0.22
UPF3A-203ENST00000474056 KIAA1549Q9HCM3 1950 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 C19orf84I3L1E1 186 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 BCKDKO14874 412 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 TO15178 435 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 HNRNPRO43390 633 aaKnown RBP16.42■□□□□ 0.22
UPF3A-203ENST00000474056 PLOD3O60568 738 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 LINC00032P0C843 101 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 CT45A8P0DMV1 189 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 CT45A9P0DMV2 189 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 DRD5P21918 477 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 ARRB2P32121 409 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 MPIP34949 423 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 PTGDSP41222 190 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 MASP1P48740 699 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 CORO7P57737 925 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 KRT71Q3SY84 523 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 CT45A2Q5DJT8 189 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 ARL13AQ5H913 290 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-203ENST00000474056 TMEM211Q6ICI0 200 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 ZNF585AQ6P3V2 769 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 NPSR1Q6W5P4 371 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 TWIST2Q8WVJ9 160 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 GFM2Q969S9 779 aaKnown RBP16.42■□□□□ 0.22
UPF3A-203ENST00000474056 TMBIM1Q969X1 311 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 SARAFQ96BY9 339 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 FCRL1Q96LA6 429 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 VSTM2LQ96N03 204 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 BTBD9Q96Q07 612 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 UBQLN3Q9H347 655 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 GLIPR2Q9H4G4 154 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 METTL7AQ9H8H3 244 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 FOLH1BQ9HBA9 442 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 ACKR4Q9NPB9 350 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 TAS2R7Q9NYW3 318 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 B4GALT7Q9UBV7 327 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 ACAD8Q9UKU7 415 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 RAB21Q9UL25 225 aa16.42■□□□□ 0.22
UPF3A-203ENST00000474056 WBP11Q9Y2W2 641 aaKnown RBP16.42■□□□□ 0.22
UPF3A-203ENST00000474056 GNB5O14775 395 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 LSM1O15116 133 aaKnown RBP16.41■□□□□ 0.22
UPF3A-203ENST00000474056 TYROBPO43914 113 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 ERN1O75460 977 aaKnown RBP16.41■□□□□ 0.22
UPF3A-203ENST00000474056 SNX4O95219 450 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 CHEK2O96017 543 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 SNRPB2P08579 225 aaKnown RBP16.41■□□□□ 0.22
UPF3A-203ENST00000474056 NEFHP12036 1026 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 PRF1P14222 555 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 NTSP30990 170 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 MC3RP41968 323 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 ETV4P43268 484 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 TRPC1P48995 793 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 NUP107P57740 925 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 RPL38P63173 70 aaKnown RBP16.41■□□□□ 0.22
UPF3A-203ENST00000474056 ZNF844Q08AG5 666 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 UGT3A2Q3SY77 523 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 TMEM81Q6P7N7 255 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 TMEM107Q6UX40 140 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 IKBIPQ70UQ0 350 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 NUP54Q7Z3B4 507 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 PACS2Q86VP3 889 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 NEIL3Q8TAT5 605 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 AGR3Q8TD06 166 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 TMEM41AQ96HV5 264 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 GNRHR2Q96P88 292 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 OSBPL11Q9BXB4 747 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 STMN4Q9H169 189 aaPredicted RBP16.41■□□□□ 0.22
UPF3A-203ENST00000474056 GALNT9Q9HCQ5 603 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 CHST11Q9NPF2 352 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 COQ3Q9NZJ6 369 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 RNF6Q9Y252 685 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 FAM215AQ9Y5M1 114 aa16.41■□□□□ 0.22
UPF3A-203ENST00000474056 FIGNL2A6NMB9 653 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 PIP5K1BO14986 540 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 REM1O75628 298 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 BPGMP07738 259 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 FGF4P08620 206 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 SDC1P18827 310 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 ACVR2AP27037 513 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 PMPCAQ10713 525 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 ZNF155Q12901 538 aaPredicted RBP16.4■□□□□ 0.22
UPF3A-203ENST00000474056 GALNTL6Q49A17 601 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 RFTN2Q52LD8 501 aaPredicted RBP16.4■□□□□ 0.22
UPF3A-203ENST00000474056 ZNF385BQ569K4 471 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 SH2D4BQ5SQS7 431 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 WLSQ5T9L3 541 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 RTL6Q6ICC9 239 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 DDIASQ8IXT1 998 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 CLYBLQ8N0X4 340 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 LIX1Q8N485 282 aa16.4■□□□□ 0.22
UPF3A-203ENST00000474056 CA5BP1Q8WTZ4 195 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms