RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NIPAL3Q6P499 406 aa8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 CPSF7Q8N684 471 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 CHST11Q9NPF2 352 aa8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 RDH8Q9NYR8 311 aa8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 PLEK2Q9NYT0 353 aa8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 KLHL9Q9P2J3 617 aa8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 NHSQ6T4R5 1651 aa8.7□□□□□ -1.02
LIMCH1-202ENST00000381753 FUOMA2VDF0 154 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 J3QKU1 62 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GADD45GO95257 159 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 MED26O95402 600 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 UBL4AP11441 157 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 DCTP40126 519 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PON3Q15166 354 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 C1orf87Q8N0U7 546 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 MYRFLQ96LU7 910 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 MKRN2Q9H000 416 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 OR14J1Q9UGF5 321 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC2A6Q9UGQ3 507 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ICKQ9UPZ9 632 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ACTL7AQ9Y615 435 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 SLX4Q8IY92 1834 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PPM1BO75688 479 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 OR12D2P58182 307 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF473Q8WTR7 871 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 MSLNLQ96KJ4 702 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ALPK1Q96QP1 1244 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TBX5Q99593 518 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 COL25A1Q9BXS0 654 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 VNN3Q9NY84 501 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TMEM5Q9Y2B1 443 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PRR19A6NJB7 356 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 SCGNO76038 276 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 LIPCP11150 499 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 NDUFB7P17568 137 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GABRR1P24046 479 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 FPR2P25090 351 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 MARCKSL1P49006 195 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PSPHP78330 225 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GRB7Q14451 532 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 MED22Q15528 200 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TMEM52BQ4KMG9 183 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GARNL3Q5VVW2 1013 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PMS2CLQ68D20 193 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TTC27Q6P3X3 843 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ADAMTSL4Q6UY14 1074 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 HOXB13Q92826 284 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PIWIL1Q96J94 861 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 L2HGDHQ9H9P8 463 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ELOVL3Q9HB03 270 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 FBXO9Q9UK97 447 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TMEM8BA6NDV4 472 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PLRG1O43660 514 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 AGFG1P52594 562 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 FAM174BQ3ZCQ3 159 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 RUNDC3AQ59EK9 446 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 C4orf32Q8N8J7 132 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 OR8K3Q8NH51 312 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PGM2Q96G03 612 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TECTBQ96PL2 329 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 NEDD4LQ96PU5 975 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 RNF11Q9Y3C5 154 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PRRT4C9JH25 899 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PDCD5O14737 125 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GSTM2P28161 218 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 DAP3P51398 398 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GBX2P52951 348 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 LIMK2P53671 638 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GANABQ14697 944 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 SSPNQ14714 243 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TIMM50Q3ZCQ8 353 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 SLX4IPQ5VYV7 408 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 B3GNTL1Q67FW5 361 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF627Q7L945 461 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 GALNT5Q7Z7M9 940 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 IGFN1Q86VF2 1251 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PRR18Q8N4B5 295 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 OR5P2Q8WZ92 322 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 LPGAT1Q92604 370 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 PRDM9Q9NQV7 894 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TMED5Q9Y3A6 229 aa8.69□□□□□ -1.02
LIMCH1-202ENST00000381753 TCRBV9S1A1TA0A576 114 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 DAPL1A0PJW8 107 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 POM121BA6NF01 834 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 ZNF169Q14929 603 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 CDK10Q15131 360 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 TRILQ7L0X0 811 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 SSX6Q7RTT6 188 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC15A3Q8IY34 581 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 OR52R1Q8NGF1 315 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 KCNN1Q92952 543 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 INTS12Q96CB8 462 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 HAVCR1Q96D42 359 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MCHR1Q99705 422 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 LIN28AQ9H9Z2 209 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 YAE1D1Q9NRH1 226 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 PAQR5Q9NXK6 330 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 TAS2R16Q9NYV7 291 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 SLC17A6Q9P2U8 582 aa8.68□□□□□ -1.02
LIMCH1-202ENST00000381753 MMACHCQ9Y4U1 282 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 2718.1 ms