RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CNOT2Q9NZN8 540 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 OR6C2Q9NZP2 312 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 DHDHQ9UQ10 334 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 TMEM14AQ9Y6G1 99 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 TMEM88BA6NKF7 163 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 M0R3H8 397 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 ARPC1BO15143 372 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 COCHO43405 550 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 PFKLP17858 780 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 TMPRSS9Q7Z410 1059 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 NRROSQ86YC3 692 aa18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 CNN2Q99439 309 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-202ENST00000356786 TRAV18A0A075B6X5 111 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 AKR1C4P17516 323 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 GABRA3P34903 492 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 AQP2P41181 271 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 STK19P49842 368 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 UPP1Q16831 310 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 FAM205BPQ63HN1 556 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 RBP7Q96R05 134 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 ORAI3Q9BRQ5 295 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 SYNPO2LQ9H987 977 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 HEBP1Q9NRV9 189 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 C11orf98E9PRG8 122 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 H7C417 338 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 GK2Q14410 553 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 PDGFRLQ15198 375 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 RPS26P11Q5JNZ5 115 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 SIMC1Q8NDZ2 872 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 TMEM185AQ8NFB2 350 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 PDLIM7Q9NR12 457 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 ARSAP15289 507 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 GIFP27352 417 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 PCGF2P35227 344 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 ACTBP60709 375 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 ACTG1P63261 375 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 CELF2-AS1Q8N7Q2 184 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 BOLLQ8N9W6 283 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 OR52E2Q8NGJ4 325 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 CNIH4Q9P003 139 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 HSPA12AO43301 675 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 PRAF2O60831 178 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 TYRP14679 529 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 RPS5P46782 204 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 LSSP48449 732 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 NRG3P56975 720 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 MAP4K2Q12851 820 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 SELPLGQ14242 412 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 SF3B4Q15427 424 aaKnown RBP eCLIP18.56■□□□□ 0.562e-6■■■■□ 22.7
CCDC88B-202ENST00000356786 ITPRIPL2Q3MIP1 535 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 ZNF529Q6P280 563 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 FAM83FQ8NEG4 500 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 OR4K13Q8NH42 304 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 SLC25A44Q96H78 314 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 MSLNLQ96KJ4 702 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 ALG8Q9BVK2 526 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 BTNL2Q9UIR0 455 aa18.56■□□□□ 0.56
CCDC88B-202ENST00000356786 RHPN2P1A8MT19 583 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 RNF13O43567 381 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 GP1BBP13224 206 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 LRIT3Q3SXY7 679 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 ARHGAP11AQ6P4F7 1023 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 Q6ZPB1 254 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 CFAP77Q6ZQR2 320 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 LSMEM2Q8N112 164 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 OR51L1Q8NGJ5 315 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 ZNF461Q8TAF7 563 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 HCAR2Q8TDS4 363 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 C16orf78Q8WTQ4 265 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 ARL11Q969Q4 196 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 SIAEQ9HAT2 523 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 QPCTLQ9NXS2 382 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 AK6Q9Y3D8 172 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 CSTAP01040 98 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 IFNA2P01563 188 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 GNSP15586 552 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 IL32P24001 234 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 FOXB2Q5VYV0 432 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 LRFN4Q6PJG9 635 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 KDELC1Q6UW63 502 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 GSG1LQ6UXU4 331 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 CSNK1G3Q9Y6M4 447 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 F5H5P2 479 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 CYP17A1P05093 508 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 WDR53Q7Z5U6 358 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 PIANPQ8IYJ0 282 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 GATSQ8NAP1 163 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 A0A1B0GV50 99 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 ARHGEF15O94989 841 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 BPIP17213 487 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 PRMT2P55345 433 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 PCGF3Q3KNV8 242 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 CADM3Q8N126 398 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 SAMD8Q96LT4 415 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 RXFP3Q9NSD7 469 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 WNT6Q9Y6F9 365 aa18.55■□□□□ 0.56
CCDC88B-202ENST00000356786 K7ERQ8 282 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 GPR37L1O60883 481 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 ACPPP15309 386 aa18.54■□□□□ 0.56
CCDC88B-202ENST00000356786 SLC11A1P49279 550 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms