RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 KNL1Q8NG31 2342 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 CCRL2O00421 344 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 PIPP12273 146 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-201ENST00000343916 MAGP20916 626 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ACTR1BP42025 376 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ACTR1AP61163 376 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 STXBP1P61764 594 aaKnown RBP18.18■□□□□ 0.5
COL9A3-201ENST00000343916 TFF2Q03403 129 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF311Q5JNZ3 666 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 SRFBP1Q8NEF9 429 aaKnown RBP18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ZCCHC10Q8TBK6 192 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 KLHL6Q8WZ60 621 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 QPCTLQ9NXS2 382 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 OR6C2Q9NZP2 312 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF229Q9UJW7 825 aa18.18■□□□□ 0.5
COL9A3-201ENST00000343916 ARHGEF17Q96PE2 2063 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-201ENST00000343916 A0A0G2JPF8 293 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 HNRNPCL2B2RXH8 293 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 HNRNPCL3B7ZW38 293 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 EMC8O43402 210 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 FCMRO60667 390 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 DNAJB6O75190 326 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 CSO75390 466 aaKnown RBP18.17■□□□□ 0.5
COL9A3-201ENST00000343916 HNRNPCL4P0DMR1 293 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 GINS1Q14691 196 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 CARTPTQ16568 116 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 TMEM201Q5SNT2 666 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 C6orf132Q5T0Z8 1188 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 FAM111BQ6SJ93 734 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 PAQR7Q86WK9 346 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 OR4N5Q8IXE1 308 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 MINDY2Q8NBR6 621 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 SIPA1Q96FS4 1042 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 SRMSQ9H3Y6 488 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 EGLN3Q9H6Z9 239 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 POLMQ9NP87 494 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-201ENST00000343916 KLF15Q9UIH9 416 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 CHST2Q9Y4C5 530 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 HEBP2Q9Y5Z4 205 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 ZNF780BQ9Y6R6 833 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 AGAP5A6NIR3 686 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 GPX5O75715 221 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 SLITRK5O94991 958 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 ZIC2O95409 532 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-201ENST00000343916 ACSL1P33121 698 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 ANXA11P50995 505 aaKnown RBP18.17■□□□□ 0.5
COL9A3-201ENST00000343916 SLC13A2Q13183 592 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 MFSD4BQ5TF39 518 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 DOK4Q8TEW6 326 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 TMEM80Q96HE8 168 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 TAPBPLQ9BX59 468 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 HHATLQ9HCP6 504 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 GIMAP4Q9NUV9 329 aa18.17■□□□□ 0.5
COL9A3-201ENST00000343916 A0A087WUU8 490 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 CPSF4LA6NMK7 179 aaKnown RBP18.16■□□□□ 0.5
COL9A3-201ENST00000343916 WWP2O00308 870 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 NR2F6P10588 404 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 GIPRP48546 466 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 TAS2R41P59536 307 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 MLLT1Q03111 559 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-201ENST00000343916 C19orf48Q6RUI8 117 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 MTSS1LQ765P7 747 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 KIF18BQ86Y91 864 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 LMAN2LQ9H0V9 348 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 ANKHQ9HCJ1 492 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 EXOSC4Q9NPD3 245 aaKnown RBP18.16■□□□□ 0.5
COL9A3-201ENST00000343916 TMEM74BQ9NUR3 256 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 NTNG1Q9Y2I2 539 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 LSM2Q9Y333 95 aaKnown RBP18.16■□□□□ 0.5
COL9A3-201ENST00000343916 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 TBX1O43435 398 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 APOL3O95236 402 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 CSTF2P33240 577 aaKnown RBP eCLIP18.16■□□□□ 0.5
COL9A3-201ENST00000343916 AVPR1BP47901 424 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 PCYT1AP49585 367 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 TGM3Q08188 693 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 GNA13Q14344 377 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 DEFB134Q4QY38 66 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 C1orf94Q6P1W5 598 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 FBXO42Q6P3S6 717 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 NRROSQ86YC3 692 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 SLC16A11Q8NCK7 471 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 OR7G2Q8NG99 324 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 GIMAP5Q96F15 307 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 LRR1Q96L50 414 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 PINK1Q9BXM7 581 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 CNIH4Q9P003 139 aa18.16■□□□□ 0.5
COL9A3-201ENST00000343916 RPL36Q9Y3U8 105 aaKnown RBP18.16■□□□□ 0.5
COL9A3-201ENST00000343916 A8MU76 341 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 CASC3O15234 703 aaKnown RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 P2RX6O15547 441 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 CTSVO60911 334 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 RASGRP1O95267 797 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 HBQ1P09105 142 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 CTHP32929 405 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 TRHRP34981 398 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-201ENST00000343916 SEPHS1P49903 392 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 PDX1P52945 283 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 TPTEP56180 551 aa18.15■□□□□ 0.5
COL9A3-201ENST00000343916 MAP4K2Q12851 820 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms