RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 LIFP15018 202 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 PBX1P40424 430 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 DPYSL2Q16555 572 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 AADACL2Q6P093 401 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 FAM199XQ6PEV8 388 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 SATL1Q86VE3 508 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 KCTD14Q9BQ13 255 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 AGXT2Q9BYV1 514 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 GPR61Q9BZJ8 451 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 EFCAB1Q9HAE3 211 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 APOBEC3GQ9HC16 384 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 SPG11Q96JI7 2443 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ARHGEF28Q8N1W1 1705 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 CDK2AP1O14519 115 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 IFNW1P05000 195 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 PAX7P23759 505 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ACRV1P26436 265 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 CCR2P41597 374 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 LASP1Q14847 261 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ZYG11AQ6WRX3 759 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 FRRS1Q6ZNA5 592 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 REXO1L1PQ8IX06 675 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 OR2Y1Q8NGV0 311 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 EME1Q96AY2 570 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 INSM2Q96T92 566 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 DENND2DQ9H6A0 471 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF888P0CJ79 500 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ATP6V1B2P21281 511 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 CD1CP29017 333 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 PLA2G7Q13093 441 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 C1orf185Q5T7R7 199 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF571Q7Z3V5 609 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 LRRC8AQ8IWT6 810 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 CBARPQ8N350 705 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 C11orf65Q8NCR3 313 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 TMEM158Q8WZ71 300 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 THRSPQ92748 146 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 TRIM51Q9BSJ1 452 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 EBPLQ9BY08 206 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 PLEKHB1Q9UF11 243 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 NPIPA5A0A0B4J1W7 369 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 NPIPA7E9PJI5 369 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ENSAO43768 121 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 NPIPA8P0DM63 369 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 TFE3P19532 575 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 EPHA1P21709 976 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 FKBP2P26885 142 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 BCL6P41182 706 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 GCNT7Q6ZNI0 430 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 C1orf52Q8N6N3 182 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 FRMD1Q8N878 549 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 SENP5Q96HI0 755 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 PDLIM2Q96JY6 352 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 OGFRQ9NZT2 677 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 KIAA1456Q9P272 454 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 INTS6Q9UL03 887 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 SLC7A7Q9UM01 511 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 POLR3HQ9Y535 204 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 GYG2O15488 501 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 RGS10O43665 173 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 CSF3P09919 207 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 CHN1P15882 459 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 GGT1P19440 569 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 HIST1H1TP22492 207 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 MAT1AQ00266 395 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 FASTKQ14296 549 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 TSNQ15631 228 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ELAVL1Q15717 326 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 OR56A3Q8NH54 315 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 NFKBIDQ8NI38 313 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 BCAS4Q8TDM0 211 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 POP5Q969H6 163 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ELMOD3Q96FG2 381 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 LPAR2Q9HBW0 351 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 C14orf119Q9NWQ9 140 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 NOP53Q9NZM5 478 aaKnown RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-203ENST00000341423 ABRACLQ9P1F3 81 aa7.9□□□□□ -1.14
HMGB1-203ENST00000341423 PPM1BO75688 479 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 CHRM4P08173 479 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 HMGA1P17096 107 aaKnown RBP7.9□□□□□ -1.15
HMGB1-203ENST00000341423 SRD5A1P18405 259 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 GFERP55789 205 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 RAB38P57729 211 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 RPS18P62269 152 aaKnown RBP7.9□□□□□ -1.15
HMGB1-203ENST00000341423 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.9□□□□□ -1.15
HMGB1-203ENST00000341423 FAM133BQ5BKY9 247 aaKnown RBP7.9□□□□□ -1.15
HMGB1-203ENST00000341423 MEX3DQ86XN8 651 aaKnown RBP7.9□□□□□ -1.15
HMGB1-203ENST00000341423 SLC30A8Q8IWU4 369 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 PAPOLGQ9BWT3 736 aaKnown RBP7.9□□□□□ -1.15
HMGB1-203ENST00000341423 UGT2B28Q9BY64 529 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 MS4A5Q9H3V2 200 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 KIR3DX1Q9H7L2 352 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 C1orf109Q9NX04 203 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 PLEK2Q9NYT0 353 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 KIF20BQ96Q89 1820 aa7.9□□□□□ -1.15
HMGB1-203ENST00000341423 M0R129 80 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 EMC8O43402 210 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 C9P02748 559 aa7.89□□□□□ -1.15
HMGB1-203ENST00000341423 FAM58BPP0C7Q3 252 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms