RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ARHGAP42A6NI28 874 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NPIPA5E9PKD4 350 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 CYB561D2O14569 222 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 MCF2LO15068 1137 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 LRP3O75074 770 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 GUCA1CO95843 209 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 PGK2P07205 417 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 MELTFP08582 738 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 SNRPCP09234 159 aaKnown RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 FOLR2P14207 255 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 IL10P22301 178 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 MATKP42679 507 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 TRA2BP62995 288 aaKnown RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NME3Q13232 169 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 CARTPTQ16568 116 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 HKDC1Q2TB90 917 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 LEMD1Q68G75 181 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 RFWD3Q6PCD5 774 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 UNC5DQ6UXZ4 953 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 ADAMTSL2Q86TH1 951 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 YRDCQ86U90 279 aaKnown RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 P2RY8Q86VZ1 359 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 ARL14Q8N4G2 192 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 MLKLQ8NB16 471 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 RELL2Q8NC24 303 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 CCNYQ8ND76 341 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 OR4Q3Q8NH05 313 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 KIAA1524Q8TCG1 905 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 TMEM37Q8WXS4 190 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NTNG2Q96CW9 530 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 SPATA13Q96N96 652 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 CPXM1Q96SM3 734 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 MYCBPQ99417 103 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 FAM124BQ9H5Z6 455 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 SYTL2Q9HCH5 934 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 AMBNQ9NP70 447 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 ABCC13Q9NSE7 274 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NINJ2Q9NZG7 142 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 NDUFA13Q9P0J0 144 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF581Q9P0T4 197 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 SENP1Q9P0U3 644 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 HOOK1Q9UJC3 728 aaKnown RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 DNPEPQ9ULA0 475 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 CCPG1Q9ULG6 757 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 SLC9A8Q9Y2E8 581 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 RPH3AQ9Y2J0 694 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 WDR90Q96KV7 1748 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 DEPDC5O75140 1603 aa2.64□□□□□ -1.99
HMGB1-201ENST00000326004 AHDC1Q5TGY3 1603 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-201ENST00000326004 UGGT1Q9NYU2 1555 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 DIP2CQ9Y2E4 1556 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 RNF103-CHMP3A0A140T963 221 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 SRRM5B3KS81 715 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 E9PAM4 449 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 E2F3O00716 465 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CFLARO15519 480 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 BCL2L11O43521 198 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 BUB1O43683 1085 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 GPRIN2O60269 458 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ALPPP05187 535 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 GSTA1P08263 222 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CCDC192P0DO97 292 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ALPPL2P10696 532 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 GNSP15586 552 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ACP1P24666 158 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TMOD1P28289 359 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 MAGEA4P43358 317 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 RABIFP47224 123 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 GPC3P51654 580 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 SLC7A2P52569 658 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 DSCR10P59022 87 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 NLRP11P59045 1033 aaKnown RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CYLC2Q14093 348 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 C17orf58Q2M2W7 97 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 C15orf32Q32M92 178 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CCDC40Q4G0X9 1142 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 CMPK2Q5EBM0 449 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 NHLRC3Q5JS37 347 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TOR1AIP1Q5JTV8 583 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 LINC00242Q5T6M2 205 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TAF3Q5VWG9 929 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 NEK5Q6P3R8 708 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 REG3GQ6UW15 175 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 BNIPLQ7Z465 357 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TAF8Q7Z7C8 310 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 LUZP1Q86V48 1076 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 RANBP3LQ86VV4 465 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 MARCH9Q86YJ5 346 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 SLC39A11Q8N1S5 342 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 HDDC3Q8N4P3 179 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 MRPL43Q8N983 215 aaKnown RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ANKRD20A12PQ8NF67 263 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 NEK11Q8NG66 645 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ITLN1Q8WWA0 313 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TMEM45BQ96B21 275 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 TMEM186Q96B77 213 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 BIRC7Q96CA5 298 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 C16orf45Q96MC5 204 aaPredicted RBP2.63□□□□□ -1.99
HMGB1-201ENST00000326004 NSMCE2Q96MF7 247 aa2.63□□□□□ -1.99
HMGB1-201ENST00000326004 ACCSQ96QU6 501 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms